ID A0A024HDM7_PSEKB Unreviewed; 509 AA.
AC A0A024HDM7;
DT 09-JUL-2014, integrated into UniProtKB/TrEMBL.
DT 09-JUL-2014, sequence version 1.
DT 27-MAR-2024, entry version 54.
DE RecName: Full=HTH-type transcriptional regulatory protein TyrR {ECO:0000256|ARBA:ARBA00029500};
GN Name=tyrr1 {ECO:0000313|EMBL:CDF82709.1};
GN ORFNames=PKB_1346 {ECO:0000313|EMBL:CDF82709.1};
OS Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=1301098 {ECO:0000313|EMBL:CDF82709.1, ECO:0000313|Proteomes:UP000025241};
RN [1] {ECO:0000313|EMBL:CDF82709.1, ECO:0000313|Proteomes:UP000025241}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=B13 {ECO:0000313|EMBL:CDF82709.1,
RC ECO:0000313|Proteomes:UP000025241};
RA Linke B.;
RL Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:CDF82709.1, ECO:0000313|Proteomes:UP000025241}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=B13 {ECO:0000313|EMBL:CDF82709.1,
RC ECO:0000313|Proteomes:UP000025241};
RA Miyazaki R., Bertelli C., Falquet L., Robinson-Rechavi M., Gharib W.,
RA Roy S., Van der Meer J.R.;
RT "Genome sequence of the 3-chlorobenzoate degrading bacterium Pseudomonas
RT knackmussii B13 shows multiple evidence for horizontal gene transfer.";
RL Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
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DR EMBL; HG322950; CDF82709.1; -; Genomic_DNA.
DR RefSeq; WP_043250088.1; NZ_HG322950.1.
DR AlphaFoldDB; A0A024HDM7; -.
DR STRING; 1301098.PKB_1346; -.
DR KEGG; pkc:PKB_1346; -.
DR PATRIC; fig|1301098.3.peg.1338; -.
DR eggNOG; COG3283; Bacteria.
DR HOGENOM; CLU_000445_8_2_6; -.
DR OrthoDB; 9804019at2; -.
DR Proteomes; UP000025241; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0019439; P:aromatic compound catabolic process; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.70.260; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR002912; ACT_dom.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR030828; HTH_TypR.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR NCBIfam; TIGR04381; HTH_TypR; 1.
DR PANTHER; PTHR32071:SF3; HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN TYRR; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF18024; HTH_50; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51671; ACT; 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW Aromatic hydrocarbons catabolism {ECO:0000256|ARBA:ARBA00022797};
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000025241};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 2..71
FT /note="ACT"
FT /evidence="ECO:0000259|PROSITE:PS51671"
FT DOMAIN 77..116
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 198..428
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 509 AA; 55881 MW; 569E3CE7C7C1C7DE CRC64;
MRIHVTFTDR VGITQEVLAL LGARNLNLDA VEMVPPNVYI DAPELRQEVL HELHGALLRV
RGVLSVQIVD MLPGQRRSLH LDALLAAMSD PVLAVDAEAR VLLANPSLIE LCGRQPAGES
LSSLFDEPGL AEHLREKGFR LPMHEVSLGG QPLLLDATPI RGGGDALDGG LLTLYPPSRI
GERLSVLHHD HAEGLQGLIG RSAPLTQLKA RVRKVAGLDA PVLIQGETGT GKELVARACH
ALSSRREEPF LALNCAALPE SLAESELFGY ASGAFTGAQR GGKPGLLELA DRGTVFLDEV
GEMSPYLQAK LLRFLNDGCF RRIGGDRETR VNVRVLCATH RNLTKMVGEG SFREDLYYRL
NVLNLQVPPL RERGQDILLL AEHFLRQACT QIQRPPCRLA PATHPLLLGN RWAGNVRQLQ
NKIFRAAAIC EGDVIEVGDL EVAGTELDTR QAEDEEVTSL EEAVQQFEKS LLQRLYAAYP
STRQLAARLR TSHTAIGQRL RKYGIRSEH
//
