ID   A0A061DJ96_THECC        Unreviewed;       792 AA.
AC   A0A061DJ96;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   27-MAR-2024, entry version 37.
DE   SubName: Full=Pentatricopeptide repeat-containing protein, putative isoform 1 {ECO:0000313|EMBL:EOX92407.1};
GN   ORFNames=TCM_001361 {ECO:0000313|EMBL:EOX92407.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX92407.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOX92407.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC       {ECO:0000256|ARBA:ARBA00007626}.
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DR   EMBL; CM001879; EOX92407.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061DJ96; -.
DR   EnsemblPlants; EOX92407; EOX92407; TCM_001361.
DR   Gramene; EOX92407; EOX92407; TCM_001361.
DR   Proteomes; UP000026915; Chromosome 1.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 7.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 9.
DR   PANTHER; PTHR45613:SF476; MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1; 1.
DR   PANTHER; PTHR45613; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   Pfam; PF01535; PPR; 4.
DR   Pfam; PF12854; PPR_1; 2.
DR   Pfam; PF13041; PPR_2; 5.
DR   PROSITE; PS51375; PPR; 11.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          160..194
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          195..229
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          265..299
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          300..334
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          370..404
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          405..439
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          440..474
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          576..610
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          611..645
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          696..730
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          731..765
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   792 AA;  89229 MW;  7D2724B30D9D962E CRC64;
     MHYALAQLAS SSSDEQETVS IPNMNHNSDH FFELDRVEVV QTLNNLIKQP NKALSFFNQL
     NEDGFFHDLC TYTAIVRILC YWGWDRKLDS VLLEIIRKEK RLGFEIMDLC EALEEGLEGE
     DSYLLVRLSN ALVKAYVSVE MFDEVINILF QTRRCGFVPH IFSCNFLMNR LIHCGKIDMA
     VATYQQLKRI GLKPNDYTYS ILIKALCKKG SLEEAFNVFR EMEEAEVRPN AFAYTTYIEG
     LCMHGRTELG YEVLKVCRKA KVPLDPFAYS VVIRGFSKEM KLKVAEDVLF DAENNGVVPD
     VTSYGALIRG YCKCGNILKA LDIHHEMVSK GIKTNCVILT SILQSLCQMG LDFKAVNQFK
     EFRDIGIFLD EVCHNVIADA LCKGGQVEEA KKLLDEMKGK QISPDVINYT TLINGYCRQG
     KVEDAWNLFK EMKNNGHKPD IVFYSVLAGG LARNGHAQKA VDLLNSMEAQ GLKCDTVIHN
     MIIKGLCMGD KVKEAENFLD SLPGKCLENY AALVDGYREA CLTKEAFKLF VKLSEQGFLV
     TKASCSKLLS SLCMKGDNDK ALMLLKIMFS LNAEPTKLMY CKLIGAFCQA GNLSIAQLLF
     NIMIKKGLTP DLVTYTIMIN GYCKVKLLQK ALDLFNNMKE RGIKPDVITY TVLLNSHMKM
     NLRSLSNPDV TQKNGKTIMV ASPFWSEMKH MGVEPDVVCY TVLIDQFCKT NNLQDASRIF
     DEMIDRGLEP DTVTYTALIS GYFKGGYIDK AVTLVNELLS KGIQPDTHTM LHHCILIAKR
     VVRSKHLCDS SG
//