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Database: UniProt
Entry: A0A061EA69_THECC
LinkDB: A0A061EA69_THECC
Original site: A0A061EA69_THECC 
ID   A0A061EA69_THECC        Unreviewed;      1706 AA.
AC   A0A061EA69;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   24-JAN-2024, entry version 41.
DE   SubName: Full=Menaquinone biosynthesis protein, putative isoform 2 {ECO:0000313|EMBL:EOY01528.1};
GN   ORFNames=TCM_011392 {ECO:0000313|EMBL:EOY01528.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY01528.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOY01528.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
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DR   EMBL; CM001880; EOY01528.1; -; Genomic_DNA.
DR   EnsemblPlants; EOY01528; EOY01528; TCM_011392.
DR   Gramene; EOY01528; EOY01528; TCM_011392.
DR   HOGENOM; CLU_001622_0_0_1; -.
DR   Proteomes; UP000026915; Chromosome 2.
DR   GO; GO:0070204; F:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity; IEA:InterPro.
DR   GO; GO:0070205; F:2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity; IEA:InterPro.
DR   GO; GO:0030976; F:thiamine pyrophosphate binding; IEA:InterPro.
DR   GO; GO:0009063; P:amino acid catabolic process; IEA:InterPro.
DR   GO; GO:0009234; P:menaquinone biosynthetic process; IEA:UniProtKB-KW.
DR   CDD; cd07037; TPP_PYR_MenD; 1.
DR   CDD; cd02009; TPP_SHCHC_synthase; 1.
DR   Gene3D; 3.40.50.970; -; 2.
DR   Gene3D; 3.40.50.1820; alpha/beta hydrolase; 1.
DR   Gene3D; 3.20.20.120; Enolase-like C-terminal domain; 1.
DR   Gene3D; 3.30.390.10; Enolase-like, N-terminal domain; 1.
DR   Gene3D; 3.40.50.1220; TPP-binding domain; 1.
DR   HAMAP; MF_01659; MenD; 1.
DR   HAMAP; MF_01660; MenH; 1.
DR   InterPro; IPR029058; AB_hydrolase.
DR   InterPro; IPR000073; AB_hydrolase_1.
DR   InterPro; IPR029035; DHS-like_NAD/FAD-binding_dom.
DR   InterPro; IPR036849; Enolase-like_C_sf.
DR   InterPro; IPR029017; Enolase-like_N.
DR   InterPro; IPR029065; Enolase_C-like.
DR   InterPro; IPR018110; Mandel_Rmase/mucon_lact_enz_CS.
DR   InterPro; IPR013342; Mandelate_racemase_C.
DR   InterPro; IPR004433; MenaQ_synth_MenD.
DR   InterPro; IPR032264; MenD_middle.
DR   InterPro; IPR022485; SHCHC_synthase_MenH.
DR   InterPro; IPR029061; THDP-binding.
DR   InterPro; IPR012001; Thiamin_PyroP_enz_TPP-bd_dom.
DR   InterPro; IPR011766; TPP_enzyme_TPP-bd.
DR   NCBIfam; TIGR01927; menC_gam_Gplu; 1.
DR   NCBIfam; TIGR00173; menD; 1.
DR   PANTHER; PTHR42916; 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE; 1.
DR   PANTHER; PTHR42916:SF1; PROTEIN PHYLLO, CHLOROPLASTIC; 1.
DR   Pfam; PF12697; Abhydrolase_6; 1.
DR   Pfam; PF13378; MR_MLE_C; 1.
DR   Pfam; PF02775; TPP_enzyme_C; 1.
DR   Pfam; PF16582; TPP_enzyme_M_2; 1.
DR   Pfam; PF02776; TPP_enzyme_N; 1.
DR   SFLD; SFLDS00001; Enolase; 1.
DR   SFLD; SFLDF00009; o-succinylbenzoate_synthase; 1.
DR   SMART; SM00922; MR_MLE; 1.
DR   SUPFAM; SSF53474; alpha/beta-Hydrolases; 1.
DR   SUPFAM; SSF52467; DHS-like NAD/FAD-binding domain; 1.
DR   SUPFAM; SSF51604; Enolase C-terminal domain-like; 1.
DR   SUPFAM; SSF54826; Enolase N-terminal domain-like; 1.
DR   SUPFAM; SSF52518; Thiamin diphosphate-binding fold (THDP-binding); 2.
DR   PROSITE; PS00909; MR_MLE_2; 1.
PE   3: Inferred from homology;
KW   Lyase {ECO:0000256|ARBA:ARBA00023239};
KW   Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW   Manganese {ECO:0000256|ARBA:ARBA00023211};
KW   Menaquinone biosynthesis {ECO:0000256|ARBA:ARBA00022428};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          1158..1254
FT                   /note="Mandelate racemase/muconate lactonizing enzyme C-
FT                   terminal"
FT                   /evidence="ECO:0000259|SMART:SM00922"
SQ   SEQUENCE   1706 AA;  188880 MW;  423711BA9E63883A CRC64;
     MLSLRDTLSI PFLALTPKPH LKNHLFHTKN PTPYTRLPLF CKKDFLSCNL KLVNGVRFDG
     PIIDANELED GDLVVETCIT HTLPPALTLE HGLQSIKEAV DALKLNPPCS SSGVLRFQVA
     VPPSAKALNW FCSQPESSAV FPLFFLSKEM NRSTCKSLYL NTARGVFGIG AAVSFTNSSS
     VPGELSSIKR CLSNDSIPMS TYGFLDINFN TELSSVKLEA GSFYLFIPLI ELDEHEDISI
     LAATLAWSDS CLCTFEQAIH SYESALYQVS SHFSPTTERC HFKCIRSAIR KLNVVEDGAV
     QMVYMNALSM GGRDFGAYPM DLRGAASFNQ FCFKFTPTIG VACNMLDNAS EMTYSVPDRA
     NINAVWALLI VEECSRLGLT YFCVAPGSRS SPLALAASAH PLVTCISCFD ERSLAFHAIG
     YARGSQKAAV IITTSGTAVS NLLPAVVEAS QDFVPLLVLS ADRPPELQDC GANQSINQVN
     HFGSFVRFFF SLPPPTDEIP ARMVLTTLDS AVHRATSSPI GPVHINCPFR EPLDDSPKIW
     KSSCLEGLDT WMSNAEPFTK YILVQHSYLC NNNTHGQMEE VLEKIQGVNK GLLLIGAICT
     EDEMWAVLLL AKNLQWPVVV DILSGLRLRR LLSSFLEVEE NIFFVDYLDH ALLSDSVRDW
     VQFDVIVQIG SRITSKRISQ MLEKCFPCSY ILVDNHPCRH DPSHFVTHRI QSSAIEFANI
     LLKARIPHRS SKWCGYLQAL NMMVGQEILF QVSAEHSLSE PHIAHVISEA LSSETALFIG
     NSMVIRDADM YGCNWKSDNH SIADMMLKTE LPCKWVSVAG NRGASGIDGL LSTAIGFAVG
     CNKRVLCVVG DISFLHDTNG LAILKQRMLR KPMTILVINN GGGAIFSLLP IADITEPRVL
     NQYFYTSHNI SIQKLCEAHG VKHLEVKTKM ELHEALFSSQ QGETDCVIEV ESSIDANATF
     HSYLRKFACQ AADHSFSILS KLSLPESMSQ GCFHCKIHSM SYSLYRIPLC APPTSSLSDS
     DRTRFYREGF ILSLTLEDGS IGYGEVAPLE ICHENLLDVE EQLRFLFHVL QGATINYFLP
     MLKSSFSSWI WKNLGIPACS LFPSVRCGLE MAILNAIAVS QGMTLLNILH PQGAKEGEKS
     ERLPSVRICG LINSSGTPEE VACIANALVE EGFTAIKIKV ARRADPVEDA AVIQEVRKKV
     GCHIELRVDA NRNWTYEEAI QFGCLVKDCN LQYIEEPVQH EDDIIRYCEE SGLPVALDET
     IDNCPENPLN KLVKYSHPRI VAVVIKPTVI GGFEKAAMFA RWAHRRGKMA IISAAFESGL
     ALSTYILFSC YVEMQNADTC KLMNNKLAPS VAHGLGTYRW LEEDVTADLL GIGPNPCTGF
     IEASVADATH LLHKFQMNNN VVHRMFTAEE VLRYQITLDS NDFSCSINVQ EIGQRNDGSV
     IVFLHGFLGT NQDWDRIMHA ISGSARCISV DLPGHGVTKM NLFDDKAAQQ PTLSMELVAD
     LLFKLIERIT PGKVTLVGYS MGARIALYMA LRFSDKIEGA VILSGSPGLE DAVERKICRA
     KDDSRACSLG THGLQLFLDT WYSGGLWKSL RSHPHFNQIA ARRSLHDDVQ GLARVLSDLS
     AGRQPSLWED LKHCRTPLVL VVGEEDEKFK GVAQKMWKEI GHVSKLHEMV VVPNCGHAVH
     LENPLPIIRL VRQFLTRLKS DPSSKK
//
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