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Database: UniProt
Entry: A0A061EC20_THECC
LinkDB: A0A061EC20_THECC
Original site: A0A061EC20_THECC 
ID   A0A061EC20_THECC        Unreviewed;       478 AA.
AC   A0A061EC20;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   24-JAN-2024, entry version 37.
DE   SubName: Full=Pentatricopeptide repeat (PPR) superfamily protein, putative {ECO:0000313|EMBL:EOY02148.1};
GN   ORFNames=TCM_011871 {ECO:0000313|EMBL:EOY02148.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY02148.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOY02148.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
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DR   EMBL; CM001880; EOY02148.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061EC20; -.
DR   EnsemblPlants; EOY02148; EOY02148; TCM_011871.
DR   Gramene; EOY02148; EOY02148; TCM_011871.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_0_1_1; -.
DR   InParanoid; A0A061EC20; -.
DR   OMA; FHGLCVK; -.
DR   Proteomes; UP000026915; Chromosome 2.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 4.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 3.
DR   Pfam; PF13041; PPR_2; 1.
DR   PROSITE; PS51375; PPR; 4.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          86..121
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          188..222
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          289..323
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          324..358
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   478 AA;  53225 MW;  962C3286E5DDF33A CRC64;
     MKTLFNKLYS TLTCSNPTNL NIVSYYFSLV NSSPNCKHLR HLHARLLRTS LYDDVILSSK
     LVLAYSQHNK LTSDSLSVFF HMPQKNIYSW NIIIGEFSRS NFPLKAIDLF LRMWQSSDVR
     PDDFTLPLVL RSCVSCGLVE LAVSFHGLCV KMGLESSLFV ASALVFLYVS SGKVYDARVL
     FDGMPKKDAV LWTAMLDGYA KHEEPMLGLE LFREMVDAGV APDWVVMLSL LLVCGQLGWL
     KQGKSVHGWC VRRCLGMELN LGNAIVDMYL KCATLAYAHR VFNMMNQRDV ISWSSLILGY
     GLSGNVSIAF RLFDNMVAKG VKPNQVTFLG ILSACAHGGL AERALSCFEM MGDYGVTPEL
     KHYASMVDCL ARAGLLEQAE DFIKRMPMEP DAAILGAILA GCRVHNNVQV GERIARKLIS
     LEPENSGYYV LLSNIYAAAG KFDDAEKVRE FMKDKNVSKV PGCSSIESES WLSSSTKQ
//
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