ID A0A061EC20_THECC Unreviewed; 478 AA.
AC A0A061EC20;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 24-JAN-2024, entry version 37.
DE SubName: Full=Pentatricopeptide repeat (PPR) superfamily protein, putative {ECO:0000313|EMBL:EOY02148.1};
GN ORFNames=TCM_011871 {ECO:0000313|EMBL:EOY02148.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY02148.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY02148.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
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DR EMBL; CM001880; EOY02148.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061EC20; -.
DR EnsemblPlants; EOY02148; EOY02148; TCM_011871.
DR Gramene; EOY02148; EOY02148; TCM_011871.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; A0A061EC20; -.
DR OMA; FHGLCVK; -.
DR Proteomes; UP000026915; Chromosome 2.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR046960; PPR_At4g14850-like_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 4.
DR PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 1.
DR PROSITE; PS51375; PPR; 4.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 86..121
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 188..222
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 289..323
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 324..358
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 478 AA; 53225 MW; 962C3286E5DDF33A CRC64;
MKTLFNKLYS TLTCSNPTNL NIVSYYFSLV NSSPNCKHLR HLHARLLRTS LYDDVILSSK
LVLAYSQHNK LTSDSLSVFF HMPQKNIYSW NIIIGEFSRS NFPLKAIDLF LRMWQSSDVR
PDDFTLPLVL RSCVSCGLVE LAVSFHGLCV KMGLESSLFV ASALVFLYVS SGKVYDARVL
FDGMPKKDAV LWTAMLDGYA KHEEPMLGLE LFREMVDAGV APDWVVMLSL LLVCGQLGWL
KQGKSVHGWC VRRCLGMELN LGNAIVDMYL KCATLAYAHR VFNMMNQRDV ISWSSLILGY
GLSGNVSIAF RLFDNMVAKG VKPNQVTFLG ILSACAHGGL AERALSCFEM MGDYGVTPEL
KHYASMVDCL ARAGLLEQAE DFIKRMPMEP DAAILGAILA GCRVHNNVQV GERIARKLIS
LEPENSGYYV LLSNIYAAAG KFDDAEKVRE FMKDKNVSKV PGCSSIESES WLSSSTKQ
//