ID   A0A061EEG8_THECC        Unreviewed;       708 AA.
AC   A0A061EEG8;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   27-MAR-2024, entry version 41.
DE   SubName: Full=Tetratricopeptide repeat (TPR)-like superfamily protein, putative {ECO:0000313|EMBL:EOY03390.1};
GN   ORFNames=TCM_018394 {ECO:0000313|EMBL:EOY03390.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY03390.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOY03390.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
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DR   EMBL; CM001882; EOY03390.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061EEG8; -.
DR   STRING; 3641.A0A061EEG8; -.
DR   EnsemblPlants; EOY03390; EOY03390; TCM_018394.
DR   Gramene; EOY03390; EOY03390; TCM_018394.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_15_6_1; -.
DR   InParanoid; A0A061EEG8; -.
DR   OMA; SEHYGIM; -.
DR   Proteomes; UP000026915; Chromosome 4.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR045215; PPR_prot_At1g15510.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 5.
DR   PANTHER; PTHR24015:SF2014; DYW_DEAMINASE DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 5.
DR   Pfam; PF13041; PPR_2; 4.
DR   PROSITE; PS51375; PPR; 5.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          66..96
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          172..207
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          274..308
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          375..409
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          476..510
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   708 AA;  78813 MW;  8BCEBFFF52AEBEA7 CRC64;
     MKRRQLLVNL FKACNDGKSA AKLHSLLLKT GFSDDSFFTT KLTSIYAKFT SIEEAQKLFD
     EMPRRTVYLW NSILRAYSKQ KQWNKAWVLF KNMISNEKGD KNEPDNFTLS IVLKACAGLQ
     LLQQGEILHG FLRQNEKVGL DLFVGSALIE FYSKCGQMGD ALKVFEEFEK PDVVLCTSMV
     SGYEQNGCFE KAVAFFSRMV TEESVEPDRV TLVSLVSACA KLMNLKLGRS VHGFVIRRGF
     EKNLSLVNAL LHLYAKTGVV EVAENLFRRM VGKDVVSWSS MIGCYSHNGA AVEALRVFNE
     MINQGFQPNT VTVVSALQAC AVACDLDNGQ KIHELATKRG FDLEVSVSTA LIDMYMKCLS
     PNEAVNVFRK MPRKDVVSWA ALLSGYAQTG MADKSIRVFR DMLSSGILPD AVSMVKILAS
     SSELGILHQA VCLHGYITRS GFDSNPFVGA SLIELYSKCG SLDYAIKVFK GIIDKDVVLW
     SAMIAGYGIH GKGRESLKLF ELMVKSSAAR PNNVTFLSIL SACSHAGLVL EGIEIFSMMV
     NDYGLGPTSE HYGIVVDLLG RTGELDRAMD IINRMPVPVE PHVWGTLLAA CRIHHNVEIG
     ELAAKNLLCL DSNHAGYYIL LSNIYAVDGK WGNVAKIRTL IKEKELKKMF AQSMVEIRNE
     VHSFVADDKF HPECERIYEL LGKLDLTMRL QLENIYGISE ALLNFKIT
//