ID A0A061EFX8_THECC Unreviewed; 386 AA.
AC A0A061EFX8;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE RecName: Full=Gypsy retrotransposon integrase-like protein 1 {ECO:0000256|ARBA:ARBA00039658};
GN ORFNames=TCM_018990 {ECO:0000313|EMBL:EOY03806.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY03806.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY03806.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
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DR EMBL; CM001882; EOY03806.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061EFX8; -.
DR EnsemblPlants; EOY03806; EOY03806; TCM_018990.
DR Gramene; EOY03806; EOY03806; TCM_018990.
DR eggNOG; KOG0017; Eukaryota.
DR HOGENOM; CLU_000384_6_0_1; -.
DR InParanoid; A0A061EFX8; -.
DR OMA; NEHENMK; -.
DR Proteomes; UP000026915; Chromosome 4.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR47266; ENDONUCLEASE-RELATED; 1.
DR PANTHER; PTHR47266:SF28; GYPSY RETROTRANSPOSON INTEGRASE-LIKE PROTEIN 1; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF00665; rve; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 4: Predicted;
KW Nucleotidyltransferase {ECO:0000313|EMBL:EOY03806.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW RNA-directed DNA polymerase {ECO:0000313|EMBL:EOY03806.1};
KW Transferase {ECO:0000313|EMBL:EOY03806.1}.
FT DOMAIN 96..255
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
SQ SEQUENCE 386 AA; 44597 MW; 09B82F9FC67A9328 CRC64;
MNFFLDGDIL YKRSRDQVLL RCMESAEARR IVEEVHEGIC GAHVSGHMLT RQQVMRAGYY
WLTLEKDCID FARKCHKCQI YADRIHTPAN SLHVLAPPWP FSMWGMDVIG LITPKASNGH
RFILVAIDYF TKWVEAASYA NVTQKVVCKF IQKEIICRYG LPERIITDNT SNLNGSMMKE
VCAKFKIKHH NSTPYRPKMN GAVEAANKNI KRIIEKMTDI YKDWHEKLPF ALHAYRTTVR
TSTGATPFSL VYGMEAVLPI EVEIPSLRVL KEVQLEETEW VNARYEQLNL IEEKRLTALC
HGQLYQKRMM RAYDKKAHSR QFREGELVLK RILPNQHDPR GKWTPNWEGP FVIKKAFSGG
ALILAEMDGR EFSNPVNADA VKKYFA
//
