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Database: UniProt
Entry: A0A061F2V6_THECC
LinkDB: A0A061F2V6_THECC
Original site: A0A061F2V6_THECC 
ID   A0A061F2V6_THECC        Unreviewed;      1072 AA.
AC   A0A061F2V6;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   24-JAN-2024, entry version 37.
DE   SubName: Full=Pentatricopeptide repeat (PPR) superfamily protein isoform 2 {ECO:0000313|EMBL:EOY11208.1};
GN   ORFNames=TCM_026455 {ECO:0000313|EMBL:EOY11208.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY11208.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOY11208.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC       {ECO:0000256|ARBA:ARBA00006643}.
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DR   EMBL; CM001883; EOY11208.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061F2V6; -.
DR   EnsemblPlants; EOY11208; EOY11208; TCM_026455.
DR   Gramene; EOY11208; EOY11208; TCM_026455.
DR   HOGENOM; CLU_002706_15_0_1; -.
DR   Proteomes; UP000026915; Chromosome 5.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR046849; Eplus_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 9.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF20430; Eplus_motif; 1.
DR   Pfam; PF01535; PPR; 4.
DR   Pfam; PF13041; PPR_2; 5.
DR   Pfam; PF13812; PPR_3; 1.
DR   PROSITE; PS51375; PPR; 8.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          158..192
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          260..294
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          361..395
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          462..496
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          532..562
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          563..597
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          664..698
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          765..799
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          980..1072
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   1072 AA;  120540 MW;  DE99126E77B59E4E CRC64;
     MFLNQLSLHG TSTYSFFYHF PSLKLKPHQI SFNHSQNFQK YFNRKWSRLR LACFNTNAIS
     NSFDELSIEE NEGNSKEVSF LYWMENRGVK ANQQTFLWLL EGCLNSGSIE QGKKLHGKIL
     KMGFSKEHVL SEKLMDLHIA SGDLDAAINV FDDMPKRNVF SWNKMISGFI SKKLTNKVLR
     FYSRMVVENV NPNERTFAGI LKACSGSNVW FEYVEQIHAR IIRHGFGFSS FVCNPLIDLY
     TKNGFIDSAI KVFDKLYVKD SVSWVAMISG LSQNGYEEQA ILLFSEMHIS GICPTPYVFS
     SVLSACTKIE FFKLGEQLHS LVFKQGFSSE TYVCNALVTL YSRSGSLVSA EQIFSNMQLR
     DGVTYNSLIS GLAQCGYSDR ALELFEKMHH DCLKPDCVTV ASLLGACASL GALYTGKQLH
     SYAIKAGFSM DIIVEGSLLD LYLKCSDIET AYEFFSTTET ENVVLWNVML VAYGQLDNLS
     ESFHIFRQMQ IEGLVPNQFT YPSILRTCTS LGALDLGEQI HSQVIKTGFQ YNVYVCSVLI
     DMYAKLGKLE TALEILRKLP EEDVVSWTAM IAGYTQHDMF YEALELFGEM LNRGIQSDNI
     GLSSAISACA GIQALSQGQQ IHAQSFLSGF SDDLSIGNAL VSLYARCSQR QDAYKAFKKI
     DNKDNISWNA LISGFTQSGF CEEALQVFSQ MNKAGLEATL YTCISSVSAA ANTANIKQGK
     QIHAMIIKKG YDLEIEASNV LITLYAKCGS IDDAKKEFLE IPEKNEVSWN AMITGYSQHG
     YGIEAIDLFE KMKQVGVTPN PVTLVGVLSA CSHVGLVDEG LDYFDSMSKE HGLVPKPEHY
     ACVVDLLGRA GLLCRARKFV EDMPIEPDAI IWRTLLSACA VHKNVDIGEF AAHHLLKLEP
     QDSASYVLLS NLYAVSKKWD SRDQTRQMMK ERGVKKEPAQ SWIEVKNSIH AFFVGDRLHP
     LAEKIYEHLE DLNKRAAEIG YVQDRYSRFS DVEQGQKDPT VHIHSEKLAI AFGLLSLPSA
     IPVRVIKNLR VCNDCHNWIK FVSKISNQLI IVRDAYRFHH FEGGSCSCRD YW
//
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