ID A0A061F525_THECC Unreviewed; 325 AA.
AC A0A061F525;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 24-JAN-2024, entry version 42.
DE SubName: Full=Transcription elongation factor family protein {ECO:0000313|EMBL:EOY12008.1};
GN ORFNames=TCM_030629 {ECO:0000313|EMBL:EOY12008.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY12008.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY12008.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE-ProRule:PRU00649}.
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DR EMBL; CM001885; EOY12008.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061F525; -.
DR STRING; 3641.A0A061F525; -.
DR EnsemblPlants; EOY12008; EOY12008; TCM_030629.
DR Gramene; EOY12008; EOY12008; TCM_030629.
DR eggNOG; KOG1793; Eukaryota.
DR HOGENOM; CLU_040584_2_0_1; -.
DR InParanoid; A0A061F525; -.
DR OMA; VAEWTRP; -.
DR Proteomes; UP000026915; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW.
DR GO; GO:0009742; P:brassinosteroid mediated signaling pathway; IEA:InterPro.
DR GO; GO:0032784; P:regulation of DNA-templated transcription elongation; IEA:InterPro.
DR Gene3D; 1.20.930.10; Conserved domain common to transcription factors TFIIS, elongin A, CRSP70; 1.
DR InterPro; IPR044204; IWS1/2.
DR InterPro; IPR035441; TFIIS/LEDGF_dom_sf.
DR InterPro; IPR017923; TFIIS_N.
DR PANTHER; PTHR47350; PROTEIN IWS1 HOMOLOG 1; 1.
DR PANTHER; PTHR47350:SF4; PROTEIN IWS1 HOMOLOG 1; 1.
DR Pfam; PF08711; Med26; 1.
DR PROSITE; PS51319; TFIIS_N; 1.
PE 4: Predicted;
KW Elongation factor {ECO:0000313|EMBL:EOY12008.1};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00649};
KW Protein biosynthesis {ECO:0000313|EMBL:EOY12008.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915}.
FT DOMAIN 115..198
FT /note="TFIIS N-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51319"
SQ SEQUENCE 325 AA; 37259 MW; 78046C04C71C37BA CRC64;
MISVMGDNRF ARKDCVMKKQ SFVEGKKRER GKEDPEINAM FDAVKRRRKV EKSSEEISLF
FEKVLAELTI VAEDDAQLNR EGQPAISKLK KLPFLTEVLS KKSFQLQFLD HGVLTLLKNW
LEPLPDGSLP NANIRGAVLN ILADFPIDLE QHYQREQFKR SGLGRAIMFL SKYDEETVSN
RRVAKDLIDR WSRSIFNKST RFSDLRNDDD IHVPVMKNPV TKPAMVDVKA CDLDLSVAKE
QKLSSRPSSL RQHVTKPEPA SLVYTVRPQS KYNPEIARTS ARQQEVQGDS RQRIEQRLKQ
LKASRKKPLQ AAKLSAEGRR MLLSV
//
