ID A0A061F9V3_THECC Unreviewed; 268 AA.
AC A0A061F9V3;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 31.
DE SubName: Full=Non-LTR retroelement reverse transcriptase, putative {ECO:0000313|EMBL:EOY13502.1};
GN ORFNames=TCM_032107 {ECO:0000313|EMBL:EOY13502.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY13502.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY13502.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
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DR EMBL; CM001885; EOY13502.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061F9V3; -.
DR EnsemblPlants; EOY13502; EOY13502; TCM_032107.
DR Gramene; EOY13502; EOY13502; TCM_032107.
DR eggNOG; KOG1075; Eukaryota.
DR HOGENOM; CLU_1039816_0_0_1; -.
DR InParanoid; A0A061F9V3; -.
DR Proteomes; UP000026915; Chromosome 7.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR002156; RNaseH_domain.
DR PANTHER; PTHR47723; OS05G0353850 PROTEIN; 1.
DR PANTHER; PTHR47723:SF17; POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN; 1.
DR Pfam; PF13456; RVT_3; 1.
PE 4: Predicted;
KW Nucleotidyltransferase {ECO:0000313|EMBL:EOY13502.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW RNA-directed DNA polymerase {ECO:0000313|EMBL:EOY13502.1};
KW Transferase {ECO:0000313|EMBL:EOY13502.1}.
FT DOMAIN 127..183
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|Pfam:PF13456"
SQ SEQUENCE 268 AA; 30642 MW; 88CB043DA3B69856 CRC64;
MILCSVGVQM YGDQLVDTGF MLNPSAPVRD YIMPNGVWDK ERDCLVVEAL WRRILPQIGI
NQFFQAPLID WLCCELYIES QLSIIKSMAV DTHNTWTTLP LLTGGLSRKE EILVGWTPPP
EEWIAMNSDR AYKSAVGTTS AGGVLRDTHD TWLVGYVCKL DITSAYRAEL WRVYKGLQLA
WEHWEISISR MYREGNKIAD FMANLGFELN SDITLYDSPP EKVEPNVPMS TRFGYRYGDW
ILVIRNLDDE PHDQLSYCLV PAIPSKPQ
//
