ID A0A061FE27_THECC Unreviewed; 562 AA.
AC A0A061FE27;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE SubName: Full=Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1 {ECO:0000313|EMBL:EOY15306.1};
GN ORFNames=TCM_034412 {ECO:0000313|EMBL:EOY15306.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY15306.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY15306.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; CM001886; EOY15303.1; -; Genomic_DNA.
DR EMBL; CM001886; EOY15304.1; -; Genomic_DNA.
DR EMBL; CM001886; EOY15305.1; -; Genomic_DNA.
DR EMBL; CM001886; EOY15306.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061FE27; -.
DR STRING; 3641.A0A061FE27; -.
DR EnsemblPlants; EOY15303; EOY15303; TCM_034412.
DR EnsemblPlants; EOY15304; EOY15304; TCM_034412.
DR EnsemblPlants; EOY15305; EOY15305; TCM_034412.
DR EnsemblPlants; EOY15306; EOY15306; TCM_034412.
DR Gramene; EOY15303; EOY15303; TCM_034412.
DR Gramene; EOY15304; EOY15304; TCM_034412.
DR Gramene; EOY15305; EOY15305; TCM_034412.
DR Gramene; EOY15306; EOY15306; TCM_034412.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_21_1; -.
DR InParanoid; A0A061FE27; -.
DR OMA; MLSDNCE; -.
DR Proteomes; UP000026915; Chromosome 8.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 6.
DR PANTHER; PTHR47938:SF1; OS02G0304800 PROTEIN; 1.
DR PANTHER; PTHR47938; RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 7.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 166..200
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 201..235
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 270..304
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 305..339
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 340..374
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 375..409
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 480..514
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 562 AA; 63793 MW; 0A1235BC7FA9FBCF CRC64;
MAFHFHHLHG VSLSFNRARN HLPCINSFSS AFSFSTLSDS SIKEPSFNQI SNQSTVDERR
VLGELSDLFQ FSHSNATVPY PYRESYPPKQ IESGAVDEYL LPEEKLRGVF LQKLRGKTAI
EHALSNVPVE LSIDIIAKVV NIGNLGGEAM VLFFNWAMKQ PGIARDIHSY YIIIKALGRR
KFFKFMIETL HDMVKEGIKP DVETLSIVMD SFIRAQRVQK AIETFENLEE LGLKRDTKSL
NVLLQCLCRR AHVGAANSLF NAVNGKVKFN CDTYNIMISG WSKLGRVSKI ERILKAMIAD
EFTPDCSTFS YLIEGLGRAG RIDDAVEIFD HMKEKGCIPD TRVYNAMISN FISVGNFDEC
MKYYKGLLNS NSDPDVDTYT KLISAFLKAQ NVADALEIFD EMLVQGIVPT TGTLTSFVEP
LCSYGPPYAA MMFYKKARKF GCKISLSAYK LLLMRLSRFG KCGMLLNIWD EMQESGHTSD
MEVYEHVING LCNIGHLENA VLVMEEALRK GFCPSRVLYS KLNNKLLASN EVEKAYKLFL
KIKNARRDEN ARRYWRANGW HF
//
