ID A0A061FXY0_THECC Unreviewed; 487 AA.
AC A0A061FXY0;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 47.
DE SubName: Full=Pentatricopeptide repeat superfamily protein {ECO:0000313|EMBL:EOY21933.1};
GN ORFNames=TCM_014106 {ECO:0000313|EMBL:EOY21933.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY21933.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY21933.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; CM001881; EOY21933.1; -; Genomic_DNA.
DR RefSeq; XP_007037432.1; XM_007037370.2.
DR RefSeq; XP_017972809.1; XM_018117320.1.
DR RefSeq; XP_017972810.1; XM_018117321.1.
DR AlphaFoldDB; A0A061FXY0; -.
DR SMR; A0A061FXY0; -.
DR EnsemblPlants; EOY21933; EOY21933; TCM_014106.
DR EnsemblPlants; Tc03v2_t007750.1; Tc03v2_p007750.1; Tc03v2_g007750.
DR EnsemblPlants; Tc03v2_t007750.2; Tc03v2_p007750.2; Tc03v2_g007750.
DR EnsemblPlants; Tc03v2_t007750.3; Tc03v2_p007750.3; Tc03v2_g007750.
DR GeneID; 18604750; -.
DR Gramene; EOY21933; EOY21933; TCM_014106.
DR Gramene; Tc03v2_t007750.1; Tc03v2_p007750.1; Tc03v2_g007750.
DR Gramene; Tc03v2_t007750.2; Tc03v2_p007750.2; Tc03v2_g007750.
DR Gramene; Tc03v2_t007750.3; Tc03v2_p007750.3; Tc03v2_g007750.
DR KEGG; tcc:18604750; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_044926_0_0_1; -.
DR InParanoid; A0A061FXY0; -.
DR OMA; DRKFYYD; -.
DR OrthoDB; 1207181at2759; -.
DR Proteomes; UP000026915; Chromosome 3.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 3.
DR PANTHER; PTHR47938:SF9; OS10G0422300 PROTEIN; 1.
DR PANTHER; PTHR47938; RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13812; PPR_3; 1.
DR PROSITE; PS51375; PPR; 2.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 210..244
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 287..321
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 461..487
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 466..487
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 487 AA; 55193 MW; 40026F4E57BDE716 CRC64;
MMHFLFRPDR HRFLTQVITT QKPKNLFHSP HSTITTPPEF EELCKVVSSS MGGLDDLESS
LNRFKLSLSP LLVTQVINSC ENEAPTRRLL RFFLWSVKNL SSSLEDKDLN NVVRVFAKKK
DHTAMGILVS DIRNRGRTME SQTFSVVAEM LVKLGREDEA LGIFKNLEKF KCPRDSFSLT
AIVNALCAKG HARKAEGVVY HHKDTIAGVE PCIYRCLLYG WSVQENVKEA RRVIKEMKSA
GFELDLYCYN TFLRCLCGKN AKRNPSGLVP EALNVMMEMR SQRIAPTSVS YNILLSCLGR
TRRVKESCQI LELMKKAGCA PDWISYYLVA RVLYLTGRFG KGNKIVDEMI EQGLTPDRKF
YYDLIGVLCG VERVNFALEL FERMKRSSLG GYGPVYDVLI PKLCRGGDFE KGRELWDEAV
ATGVSLSCSS DVLDPSITEV FKPTRKAEKV HLKGCTMAKS PVKNKQNTMK GKKYKKIKKK
KKKSSSK
//
