ID A0A061G852_THECC Unreviewed; 358 AA.
AC A0A061G852;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 24-JAN-2024, entry version 32.
DE SubName: Full=Sequence-specific DNA binding transcription factors,DNA binding,DNA binding isoform 2 {ECO:0000313|EMBL:EOY25736.1};
GN ORFNames=TCM_027110 {ECO:0000313|EMBL:EOY25736.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY25736.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY25736.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
CC -!- SIMILARITY: Belongs to the VPS72/YL1 family.
CC {ECO:0000256|ARBA:ARBA00006832}.
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DR EMBL; CM001884; EOY25736.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061G852; -.
DR EnsemblPlants; EOY25736; EOY25736; TCM_027110.
DR Gramene; EOY25736; EOY25736; TCM_027110.
DR eggNOG; KOG2897; Eukaryota.
DR OMA; TGPTIRY; -.
DR Proteomes; UP000026915; Chromosome 6.
DR GO; GO:0005634; C:nucleus; IEA:InterPro.
DR GO; GO:0140849; F:ATP-dependent H2AZ histone chaperone activity; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR InterPro; IPR008895; Vps72/YL1.
DR InterPro; IPR013272; Vps72/YL1_C.
DR InterPro; IPR046757; YL1_N.
DR PANTHER; PTHR13275:SF4; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 72 HOMOLOG; 1.
DR PANTHER; PTHR13275; YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1; 1.
DR Pfam; PF05764; YL1; 1.
DR Pfam; PF08265; YL1_C; 1.
DR SMART; SM00993; YL1_C; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915}.
FT DOMAIN 264..293
FT /note="Vps72/YL1 C-terminal"
FT /evidence="ECO:0000259|SMART:SM00993"
FT REGION 1..149
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 318..358
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 163..211
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 49..81
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 93..109
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 110..148
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 323..344
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 358 AA; 41263 MW; 36314B19BADA4880 CRC64;
METGKEEETH VFLDPASRPT KGKRMTKLLD EEAEEDELFW NQEAFKEEDN DANYEEELEV
ADVFDSDFDE DEPEPDDEAE NETEERVRTK KRLIFPGKPS MKKKKKKKVL SKLDGDPKDE
KSTQKPTSPQ HHDAPDDAEG ERIIRKSTRT SVIVRQAERD AIRAALQATM KAIKRKKEGE
EKRITQEEML LEAAQTEIMN LRNLERVLAR EEEVKKRAII HKPVYSGPQI KYVSKDGCSY
LEFSKGSSFQ SELSTTLPPY PEKAICAVTG LPAKYRDPKT GLSYATKEAF KIIRERFENE
HRSAPKEMDM GVLFDSLSGK GLMPRQRRSQ ISNRSQTSRF QYLGHFHRTP TDDDEESD
//
