GenomeNet

Database: UniProt
Entry: A0A061GIH1_THECC
LinkDB: A0A061GIH1_THECC
Original site: A0A061GIH1_THECC 
ID   A0A061GIH1_THECC        Unreviewed;       492 AA.
AC   A0A061GIH1;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   24-JAN-2024, entry version 36.
DE   SubName: Full=Smg-4/UPF3 family protein, putative isoform 5 {ECO:0000313|EMBL:EOY26874.1};
GN   ORFNames=TCM_028841 {ECO:0000313|EMBL:EOY26874.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY26874.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOY26874.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
CC   -!- SIMILARITY: Belongs to the RENT3 family.
CC       {ECO:0000256|ARBA:ARBA00005991}.
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DR   EMBL; CM001884; EOY26874.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061GIH1; -.
DR   EnsemblPlants; EOY26874; EOY26874; TCM_028841.
DR   Gramene; EOY26874; EOY26874; TCM_028841.
DR   Proteomes; UP000026915; Chromosome 6.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.
DR   CDD; cd12455; RRM_like_Smg4_UPF3; 1.
DR   Gene3D; 3.30.70.330; -; 1.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR   InterPro; IPR035979; RBD_domain_sf.
DR   InterPro; IPR039722; Upf3.
DR   InterPro; IPR005120; UPF3_dom.
DR   PANTHER; PTHR13112:SF5; SMG4_UPF3 DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR13112; UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN; 1.
DR   Pfam; PF03467; Smg4_UPF3; 1.
DR   SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915}.
FT   DOMAIN          7..168
FT                   /note="UPF3"
FT                   /evidence="ECO:0000259|Pfam:PF03467"
FT   REGION          167..257
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          276..492
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        198..227
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        283..309
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        322..349
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        362..383
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        393..417
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        452..468
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   492 AA;  54461 MW;  2DA54F99D22DEE44 CRC64;
     MKEPLRRTKV VIRHLPPSVT QSFLFSQIDD RFSDRYNWFS FRLGKSSHKH QRYSRAYINF
     KRPEDVFEFA EFFDGHVFVN EKGTQFKAIV EYAPSQRVPK PGTKKDGREG TIFKDPDYLE
     FLKLIAKPVD NLPSAEIQLE RKEVELSGAP KETPVITPLM AFVRQKRAAE SGTQGPVTRR
     KIGRKAGAAS TGKSGSSSKR GSEKKKYILK DSVKGTHHKD KSKFFVASKQ EDQPVPSVGK
     EKRENGTVYG IDGPVTGITL TADSGKKKIL LLKPKDQEAP HVPQGASEQQ GSSSPVANSP
     GSTAPKQSQR REAGGRLIRS ILLSNEASQN QPLAGVKPQQ KTQTMNLDNV KRPPRPANTR
     LGSGSEKHEK RIRNKDRLDR GVWAPLRGSD VSQASEERFS PSMSQSAQAS SNSIEGEMKG
     DIPNGRSGRN VPSENGSNRH FDRRSAAYNI KDDGSVISSE SKSSKRGATG SGAHERNKFG
     FRSHLQVLRK ST
//
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