ID A0A068SHR7_9FUNG Unreviewed; 958 AA.
AC A0A068SHR7;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE RecName: Full=Retrotransposon ty3-gypsy subclass {ECO:0008006|Google:ProtNLM};
GN ORFNames=LCOR_12217.1 {ECO:0000313|EMBL:CDH61442.1};
OS Lichtheimia corymbifera JMRC:FSU:9682.
OC Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota; Mucoromycotina;
OC Mucoromycetes; Mucorales; Lichtheimiaceae; Lichtheimia.
OX NCBI_TaxID=1263082 {ECO:0000313|EMBL:CDH61442.1, ECO:0000313|Proteomes:UP000027586};
RN [1] {ECO:0000313|EMBL:CDH61442.1, ECO:0000313|Proteomes:UP000027586}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JMRC:FSU:9682 {ECO:0000313|Proteomes:UP000027586};
RA Schwartze V.U., Winter S., Shelest E., Marcet-Houben M., Horn F.,
RA Wehner S., Hoffmann K., Riege K., Sammeth M., Nowrousian M., Valiante V.,
RA Linde J., Jacobsen I.D., Marz M., Brakhage A.A., Gabaldon T., Bocker S.,
RA Voigt K.;
RT "Gene expansion shapes genome architecture in the human pathogen
RT Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient
RT terrestrial Mucorales (Mucoromycotina).";
RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CDH61442.1}.
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DR EMBL; CBTN010000190; CDH61442.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A068SHR7; -.
DR STRING; 1263082.A0A068SHR7; -.
DR VEuPathDB; FungiDB:LCOR_12217.1; -.
DR OrthoDB; 1366780at2759; -.
DR Proteomes; UP000027586; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProt.
DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 2.40.50.40; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR Pfam; PF00385; Chromo; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SMART; SM00298; CHROMO; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50013; CHROMO_2; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000027586};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW Transposable element {ECO:0000256|ARBA:ARBA00022464}.
FT DOMAIN 582..740
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT DOMAIN 870..928
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT REGION 918..958
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 958 AA; 111210 MW; 74721F3F54D9B942 CRC64;
MMRELEPYMQ ANAAIPQSSF CTVKESLIRL PTPENARVYR RQYPLPIALE PIIDDAVNTW
LKNGTIIRAS IDNGWNSPLT LADKKDASGK KTGKRPCLDP RLINQLLPDD RYPLPLIKQI
FHRLHGATIY TTLDLKNAFH RFRIHPDDQH KTTFTHRNIQ YMFQGCPFGL KPLSSKFQRV
MTYIFKDMPF VETFVDDIVI HSTTFDEHIK HVKQAISALT KENLILNPAK CHFAQHTVYL
LGFTISAEGK RPDPRKIEHV QQWPTPCTGK DIQSFLGIVN YFRDHIPKIA QLNAPLERLR
NENSLQGLWT EEHDKHFSLL KKILCSDLIL HHPDLQQPFY IATDASNTGI GAVLFQIVDN
KKRYIEFAAR ALSSSERNYS TTRRELLAIV FALRRFHHFV WGNPFTLYTD HRSLTHLFTQ
SIANSMMINW FDTLLDYTFN VVHLPGTENI LPDHLSRLFE GNTKRLEGDM AYKPNKLSDT
TRKRITSERY ASKTQRIFRV HKTENNDHER MTVPIEERNA ILERSHLLGH IGAEAMVKDI
HHNEGYHWPN ILHDAVSYVK KCQTCQRNNI SKRGYHPLRP IYAYLPGDHW AMDLAGDFEE
SDCHNKYLLV LVDVCTRFCL LRPIPNKEAA TIAKELVKVF SDFGYPRIIQ SDNGTEFKNQ
LLNEILENIG VDHRLTTPYH PQANGLAERW VQSSVMIIRK LIDGTSKDWD YFVPATQLAL
NHKISKRLNT SPFTLMFARK LNPFRDYRND KVFKPMTEAQ LLENIEHMTN IVFPAIKERT
DHVIQQQKEH FDSTHNIITF TPGDHVMVKV PTRTGKLTPV YEGPYRVLRQ NNGGAYELQD
EMGEQLPRNY TPSELKLVDQ DDLVPTDELY EVESIINHRG KPGNREYLVR WKGYGPQDDS
WLTPDKFSSN KTIKTYWERR KTHSTSNDLP ASTRKRKRTA NETPTDKPTR RSKRSQQA
//
