ID A0A072TMX0_MEDTR Unreviewed; 655 AA.
AC A0A072TMX0;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 49.
DE SubName: Full=PPR containing plant-like protein {ECO:0000313|EMBL:KEH18839.1};
DE SubName: Full=Putative pentatricopeptide {ECO:0000313|EMBL:RHN39872.1};
GN Name=25500864 {ECO:0000313|EnsemblPlants:KEH18839};
GN OrderedLocusNames=MTR_8g028890 {ECO:0000313|EMBL:KEH18839.1};
GN ORFNames=MtrunA17_Chr8g0348641 {ECO:0000313|EMBL:RHN39872.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH18839.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH18839.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH18839.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH18839,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH18839.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH18839.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH18839,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH18839}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH18839};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [4] {ECO:0000313|EMBL:RHN39872.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN39872.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
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DR EMBL; CM001224; KEH18839.1; -; Genomic_DNA.
DR EMBL; PSQE01000008; RHN39872.1; -; Genomic_DNA.
DR RefSeq; XP_013444814.1; XM_013589360.1.
DR AlphaFoldDB; A0A072TMX0; -.
DR PaxDb; 3880-AES78718; -.
DR EnsemblPlants; KEH18839; KEH18839; MTR_8g028890.
DR GeneID; 25500864; -.
DR Gramene; KEH18839; KEH18839; MTR_8g028890.
DR KEGG; mtr:25500864; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR OMA; MYAKNEN; -.
DR OrthoDB; 445296at2759; -.
DR Proteomes; UP000002051; Chromosome 8.
DR Proteomes; UP000265566; Chromosome 8.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:EnsemblPlants.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IEA:EnsemblPlants.
DR GO; GO:0000963; P:mitochondrial RNA processing; IEA:EnsemblPlants.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 4.
DR PANTHER; PTHR24015:SF398; OS07G0259400 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 3.
DR PROSITE; PS51375; PPR; 3.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 232..262
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 335..369
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 436..470
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 655 AA; 74209 MW; E898B68CC9423FA6 CRC64;
MFSKLHFKKQ LPFPPSPFSF FIECFYFSSH QPHPWNSSSR LRASMPIPNQ THFNDPNTVH
LFCSNALKIS AKKGYLPEGK QLHAHLIKFG FCQVLSLQNQ ILSVYLKCQE AEDAKKLFEE
LPVRNVVSWN IMIRASVGRN DENESSGMRL CFSYFRRMLL EMMVPDHITF NGLICLCTQF
NDIEMGVQLH CFTVKVGFDL DCFVGCALVG LYAKCGFVEN ARRVFCDVSC RDLVMWNVMV
SCYVFNSLPE EAFRVFNSMR LDVVNGDEFT FSSLLSVISD DALEYYDFGK QVHSLVLRQS
FDSDVLVASA LINMYAKSEN IIDARRVFDE MSIRNVVAWN TMIVGFGNHG DGNEVMKLVK
EMLREGFLPD ELTISSIISS CGYASAITET LQVHAFAVKL SCQDFLSVAN SLISAYSKCG
SITSAFKCFE LTSQPDLVTW TSLIYAYAFH GLAEKSTEMF EKMLSYGIKP DRIAFLGVLS
ACAHCGLVTK GLHYFKLMTN AYQIVPDSEH YTCLVDLLGR YGLINEAFEI LRSMPIEVDS
DTLGAFIGSC KLHSNMELAK LAAEKLFLIE PEKSVNYAVM SNIFASQKHW YDVERIRKTM
EDKRDAKVPG CSWIEIGNQI HSFVSNDKSH PNALEMYVTL NMLLRPMKEQ NGIHL
//
