ID A0A072TQQ4_MEDTR Unreviewed; 1467 AA.
AC A0A072TQQ4;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 49.
DE SubName: Full=Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:KEH19188.1};
DE SubName: Full=Putative TIR domain, winged helix-turn-helix DNA-binding domain-containing protein {ECO:0000313|EMBL:RHN40436.1};
GN Name=25501109 {ECO:0000313|EnsemblPlants:KEH19188};
GN OrderedLocusNames=MTR_8g042470 {ECO:0000313|EMBL:KEH19188.1};
GN ORFNames=MtrunA17_Chr8g0354701 {ECO:0000313|EMBL:RHN40436.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH19188.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH19188.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH19188.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH19188,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH19188.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH19188.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH19188,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH19188}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH19188};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [4] {ECO:0000313|EMBL:RHN40436.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN40436.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
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DR EMBL; CM001224; KEH19188.1; -; Genomic_DNA.
DR EMBL; PSQE01000008; RHN40436.1; -; Genomic_DNA.
DR RefSeq; XP_013445162.1; XM_013589708.1.
DR EnsemblPlants; KEH19188; KEH19188; MTR_8g042470.
DR GeneID; 25501109; -.
DR Gramene; KEH19188; KEH19188; MTR_8g042470.
DR KEGG; mtr:25501109; -.
DR OrthoDB; 908874at2759; -.
DR Proteomes; UP000002051; Chromosome 8.
DR Proteomes; UP000265566; Chromosome 8.
DR GO; GO:0043531; F:ADP binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0008757; F:S-adenosylmethionine-dependent methyltransferase activity; IEA:UniProt.
DR GO; GO:0006952; P:defense response; IEA:InterPro.
DR GO; GO:0007165; P:signal transduction; IEA:InterPro.
DR Gene3D; 1.10.8.430; Helical domain of apoptotic protease-activating factors; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.80.10.10; Ribonuclease Inhibitor; 2.
DR Gene3D; 3.40.50.10140; Toll/interleukin-1 receptor homology (TIR) domain; 1.
DR InterPro; IPR042197; Apaf_helical.
DR InterPro; IPR044974; Disease_R_plants.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR032675; LRR_dom_sf.
DR InterPro; IPR002182; NB-ARC.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000157; TIR_dom.
DR InterPro; IPR035897; Toll_tir_struct_dom_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR11017:SF219; ARCHAEAL ATPASE; 1.
DR PANTHER; PTHR11017; LEUCINE-RICH REPEAT-CONTAINING PROTEIN; 1.
DR Pfam; PF00560; LRR_1; 1.
DR Pfam; PF00931; NB-ARC; 1.
DR Pfam; PF01582; TIR; 1.
DR PRINTS; PR00364; DISEASERSIST.
DR SMART; SM00255; TIR; 1.
DR SUPFAM; SSF52058; L domain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF52200; Toll/Interleukin receptor TIR domain; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50104; TIR; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000313|EMBL:RHN40436.1};
KW Plant defense {ECO:0000256|ARBA:ARBA00022821};
KW Reference proteome {ECO:0000313|Proteomes:UP000002051}.
FT DOMAIN 7..177
FT /note="TIR"
FT /evidence="ECO:0000259|PROSITE:PS50104"
FT COILED 1314..1397
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 1467 AA; 165477 MW; 43E6C21A3E28F56B CRC64;
MDVQAFFTYD VFLSFRGSDT RYGVTGYLYK ALTDKGIRTF IHDSELQIGD EITPSLFKAI
EESRICIIIF STNYASSSFC LDELTAILYS YEEERNGRVV FPVFYHVESS VIRHGRGSYG
DALAKHEERF MKDGVHRVKK WRTSLCKAAN LSGYHFTGDG YEHEFIEAIV EYVCKQVTHV
VPLHTADADQ AVGIEPRVNN VNSLLDLGSD NVLLLGIYGM GGIGKTTIAR AVYDSISDQF
EGLCFLNNVR DDSDKFGPMH LQETMLYETC GLKIKLGGVN EGIRIIKQRL SKKKVLLVLD
DVNKLMQLEV IAGAYDWFGP GSRIIITTRE HHLLVMHGVD IIYEVDELSE GESLDLLCRS
AFKTNKVDPS YADILKRVFT FTSGLPLALR AVGSYLFGRN INEWESALDL YERIPHNDIQ
TILRISFDSL EEEEKDIFLD IACFFNGDKL EYVEDILLAR YGVSVRYSIR VLIEKSLIYI
DKGLVTLHNL VEDMGKEIVR QESPKEPGER SRLWFVNDVV QVLEDNSGSA AIEILFLDFP
IHAMNSNGSK GGEVNWDGEA LKNMRNLKTL VIRNGSFNQG PTHLPNSLRV LEWWGYPSPS
LPNDFHPKKL AMLKLPESCL RISEPIQGVI NLTVLDFSYS DWITHIPDVS GLQNLEKIYF
KQCENLTRIH ESVGLLEKLR ILNVVHCKKL SALPPIRLTS LEHLNLSHCS VLESFPEILG
KMENLTELHI MGSPIKELPY SIQNLIRLRK LELHICGMVR LPSSIVMLPE LSLMCVSKCQ
RLWFSEQDKG EELESKSSKT EHLTLSYCNI SDELLPIGLA WFANVKDLNL SGNNFETLHA
CIKECPFLRN LKMDYCDNIQ EIKGLPWKLE SFSAKGCTSL KYMDLAGESH SLRELILDDC
VFLREIIGDL PNLNHFSAKN CVSLTSQCTS MLMNQESVEA GNKMFSLPGK KIPDWFALQS
REESTAFYFR NKFPAVSVCL VIGHLDEKPI AVNFSPKVFI NGNKLSSGNQ FVYNFRVATD
HILLFDLRLL KFEDNGDALF LDNEWNHVVV SYVDHITDNE VPIRVVSKYS GIHVFNQISG
MEDIRFTIPQ KTLINATLDS TNSMMVPSQK IMTKRPEEDQ TVVLSPTLKS IQSPSPTSEV
VKGLVPLPTF PVKRPLPDVG EEISENLSDE EVCVTAIQKD LPVIQRCSEG DDVELESISC
EEKYSSNTEG SDSDDPFDLV NRKLYDSGMA TISSGERSGD ASMRSIREAI NGLELLMVND
LSEVSSDPAK LSELHQLLDL LSTSSHPKVT VEVKEAIVEF KKNVFLSFQE FQSAAESVNK
LKNFERQLAV IQQKTMEGKG QRTDLKNTIK KVSLAMTAEI SRKKELEAEN ATLRIQLDTN
ERELEQVVLN LKNQEEILST YSTSCASLNE QARALLKQTD DLLAASSGIK QDGEAAELKQ
SRIKLTWSID LTSQLNKMKK TILGFFE
//