ID A0A072UDX7_MEDTR Unreviewed; 1511 AA.
AC A0A072UDX7;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 53.
DE SubName: Full=Putative DNA helicase chromatin regulator PHD family {ECO:0000313|EMBL:RHN48494.1};
DE EC=3.6.4.12 {ECO:0000313|EMBL:RHN48494.1};
DE SubName: Full=SNF2 family amino-terminal protein {ECO:0000313|EMBL:KEH24020.1};
GN Name=25499318 {ECO:0000313|EnsemblPlants:KEH24020};
GN OrderedLocusNames=MTR_7g101465 {ECO:0000313|EMBL:KEH24020.1};
GN ORFNames=MtrunA17_Chr7g0264371 {ECO:0000313|EMBL:RHN48494.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH24020.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH24020.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH24020.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH24020,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH24020.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH24020.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH24020,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH24020}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24020};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [4] {ECO:0000313|EMBL:RHN48494.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN48494.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
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DR EMBL; CM001223; KEH24020.1; -; Genomic_DNA.
DR EMBL; PSQE01000007; RHN48494.1; -; Genomic_DNA.
DR RefSeq; XP_013449992.1; XM_013594538.1.
DR STRING; 3880.A0A072UDX7; -.
DR PaxDb; 3880-AES81881; -.
DR EnsemblPlants; KEH24020; KEH24020; MTR_7g101465.
DR Gramene; KEH24020; KEH24020; MTR_7g101465.
DR eggNOG; KOG0383; Eukaryota.
DR eggNOG; KOG0384; Eukaryota.
DR HOGENOM; CLU_248195_0_0_1; -.
DR OrthoDB; 357661at2759; -.
DR Proteomes; UP000002051; Chromosome 7.
DR Proteomes; UP000265566; Chromosome 7.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0016887; F:ATP hydrolysis activity; IBA:GO_Central.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0042393; F:histone binding; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR CDD; cd00024; CD_CSD; 1.
DR Gene3D; 2.40.50.40; -; 2.
DR Gene3D; 6.10.250.1310; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR45623; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED; 1.
DR PANTHER; PTHR45623:SF51; DNA HELICASE CHROMATIN REGULATOR PHD FAMILY-RELATED; 1.
DR Pfam; PF00385; Chromo; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00298; CHROMO; 2.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS50013; CHROMO_2; 2.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000313|EMBL:RHN48494.1};
KW Hydrolase {ECO:0000313|EMBL:RHN48494.1};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 106..171
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT DOMAIN 180..254
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT DOMAIN 578..743
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 241..260
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1511 AA; 171841 MW; BF0BB475C82390DC CRC64;
MTSRKRNRVA DDGGISFSRC VKKLAEEYKG KTRVDPHGKN GKGDGDIVCD KCLLEGTLLF
CCGKGCQRRY HPSCLDPLLK FLPIGFWHCL WCVEKKIKLG VHSVSKGVES ILDSREVVSK
DKVIQREYFV KYQDLAHAHN CWIPEKQMLI EAPKLLKKYK NRKQVVRWKK DWSIPHRLLL
KREIILSKKN AHLFDGNDDN DSVCQYEWLV KWTGLGYDHV TWELDDASFM TSSKGKELVD
NYESRQKKSD GPSTPFEANE ESKVSFTELS ELSSGDSPGL YNQHLSYVNR LRMHWHKGQS
AVIVDDQIDQ ERVRKMILFI LSLSCDVKKP FLIISTSTGL SAWEIEFFHL APSANLVVYK
GKEDVRRRIR ALDFYNEDGG ILFQILLSSS DSISEDLHAL RCIPWEAIVI DECQRPMILR
HIDNFNILAA DIRRLLLVSG QIKEDRDYIK LLSFLKSGHD ELHFSSASIS NLQSELEQYT
VLKCNSVSSR FIEYWVPAQF SSMQLKQYCS MLLSNSMLLC SGQRSDSVGA LRELVISTKK
CCNHPYLLNP SLNNLVTRGL PVEEHFNIGI KASGKLQLLE KILFEAKSRK LRVIILFQSS
CGSRSIGDIL DDVLCHRFGE DCYVRYCKDY IPSKNQAALD TFNDRESGKF VFLIENRACT
SSIKLSSVDT IILFDSDLDP QNDLKCVQKM SISSNFKQLT VLRLYSYLTV EEKVLALAKE
GIALDRNMQL NQSSIHTLLK WGASYLFSKF DDLHGSGTSV SASGISDQSI LNDVICELSC
KLASDSDATH SHRQSFISRV KQNGGEYARN ISLLGEREMM KLGNDTHTFS WSDLLKGRKP
HWNFLPVSSQ RIRKTVEHFP HTAKGPKQEN DAIIRKKRTE SKDNVFPIRK NVSKDNVDPE
KREITKDNID PKRRKLSKEI VDSKHLRKKW MNKKSRSAGK RKGKFNGAAV MKKQIPKQKK
LHGMPKSTKL LSKPDISGLC DVLHFSKNVK AVAIRILEYV FENYNINCRE VSTVQAFEIS
VCWIAASLLK HKIDRKHSLD LAKRHLNLDC KEEEATDVYH VLKKCEKDFS SCLQNELCVE
KSNINGGSGS LTPELQDSVE EENQKGFQRP HVLNLVKSAA TEPDLPRKSP TTVLFSQDQI
YTENIHNKPY VTHEISTSKI TLGNMSVEME VDASMESEAD ERINAVNSVA AEVSSLEQWD
KVPNSSNDIN YVSPVTCSLE RQSHVVNADI TQFDGRVFID PQTLMNQLID IDNSLNMSTH
PAQLHNVETD TVTCDRTAVA AVRQRHRIVN PVCGVSTASG FAECPLPYMQ PSHANLTPFP
QTLSASPSFM EDLSRSVMPL DRFINHNGRD HRYIRGSEER LQALYDPVEL ASSSFVSPVT
SQPSSYAPWN GNAIHVPHDI TNPGYMSSDP FQAHYVTYQM PHVADPDPLL IEMERIRKMN
ESAVKTHEEK ILQLQSDYKK EFETLCEKHC MMLQNVNTAV ALKNKDLETQ RDIVLMNMIL
ADVWVRNDSS W
//