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Database: UniProt
Entry: A0A072UDX7_MEDTR
LinkDB: A0A072UDX7_MEDTR
Original site: A0A072UDX7_MEDTR 
ID   A0A072UDX7_MEDTR        Unreviewed;      1511 AA.
AC   A0A072UDX7;
DT   01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT   01-OCT-2014, sequence version 1.
DT   24-JAN-2024, entry version 53.
DE   SubName: Full=Putative DNA helicase chromatin regulator PHD family {ECO:0000313|EMBL:RHN48494.1};
DE            EC=3.6.4.12 {ECO:0000313|EMBL:RHN48494.1};
DE   SubName: Full=SNF2 family amino-terminal protein {ECO:0000313|EMBL:KEH24020.1};
GN   Name=25499318 {ECO:0000313|EnsemblPlants:KEH24020};
GN   OrderedLocusNames=MTR_7g101465 {ECO:0000313|EMBL:KEH24020.1};
GN   ORFNames=MtrunA17_Chr7g0264371 {ECO:0000313|EMBL:RHN48494.1};
OS   Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX   NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH24020.1, ECO:0000313|Proteomes:UP000002051};
RN   [1] {ECO:0000313|EMBL:KEH24020.1, ECO:0000313|Proteomes:UP000002051}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=A17 {ECO:0000313|EMBL:KEH24020.1}, and cv. Jemalong A17
RC   {ECO:0000313|EnsemblPlants:KEH24020,
RC   ECO:0000313|Proteomes:UP000002051};
RX   PubMed=22089132; DOI=10.1038/nature10625;
RA   Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA   Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA   Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA   Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA   Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA   Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA   Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA   Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA   Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA   Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA   Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA   Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA   Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA   Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA   Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA   Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA   Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA   Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA   Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA   Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA   Town C.D., Roe B.A.;
RT   "The Medicago genome provides insight into the evolution of rhizobial
RT   symbioses.";
RL   Nature 480:520-524(2011).
RN   [2] {ECO:0000313|EMBL:KEH24020.1, ECO:0000313|Proteomes:UP000002051}
RP   GENOME REANNOTATION.
RC   STRAIN=A17 {ECO:0000313|EMBL:KEH24020.1}, and cv. Jemalong A17
RC   {ECO:0000313|EnsemblPlants:KEH24020,
RC   ECO:0000313|Proteomes:UP000002051};
RX   PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA   Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA   Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA   Schwartz D.C., Town C.D.;
RT   "An improved genome release (version Mt4.0) for the model legume Medicago
RT   truncatula.";
RL   BMC Genomics 15:312-312(2014).
RN   [3] {ECO:0000313|EnsemblPlants:KEH24020}
RP   IDENTIFICATION.
RC   STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH24020};
RG   EnsemblPlants;
RL   Submitted (APR-2015) to UniProtKB.
RN   [4] {ECO:0000313|EMBL:RHN48494.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Leaves {ECO:0000313|EMBL:RHN48494.1};
RA   Pecrix Y., Gamas P., Carrere S.;
RT   "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL   Nat. Plants 0:0-0(2018).
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DR   EMBL; CM001223; KEH24020.1; -; Genomic_DNA.
DR   EMBL; PSQE01000007; RHN48494.1; -; Genomic_DNA.
DR   RefSeq; XP_013449992.1; XM_013594538.1.
DR   STRING; 3880.A0A072UDX7; -.
DR   PaxDb; 3880-AES81881; -.
DR   EnsemblPlants; KEH24020; KEH24020; MTR_7g101465.
DR   Gramene; KEH24020; KEH24020; MTR_7g101465.
DR   eggNOG; KOG0383; Eukaryota.
DR   eggNOG; KOG0384; Eukaryota.
DR   HOGENOM; CLU_248195_0_0_1; -.
DR   OrthoDB; 357661at2759; -.
DR   Proteomes; UP000002051; Chromosome 7.
DR   Proteomes; UP000265566; Chromosome 7.
DR   GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IBA:GO_Central.
DR   GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IBA:GO_Central.
DR   GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR   GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR   GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR   GO; GO:0042393; F:histone binding; IBA:GO_Central.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR   CDD; cd00024; CD_CSD; 1.
DR   Gene3D; 2.40.50.40; -; 2.
DR   Gene3D; 6.10.250.1310; -; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR   InterPro; IPR016197; Chromo-like_dom_sf.
DR   InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR   InterPro; IPR023780; Chromo_domain.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR038718; SNF2-like_sf.
DR   InterPro; IPR000330; SNF2_N.
DR   InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR45623; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED; 1.
DR   PANTHER; PTHR45623:SF51; DNA HELICASE CHROMATIN REGULATOR PHD FAMILY-RELATED; 1.
DR   Pfam; PF00385; Chromo; 1.
DR   Pfam; PF00176; SNF2-rel_dom; 1.
DR   SMART; SM00298; CHROMO; 2.
DR   SMART; SM00249; PHD; 1.
DR   SUPFAM; SSF54160; Chromo domain-like; 2.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR   PROSITE; PS50013; CHROMO_2; 2.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS01359; ZF_PHD_1; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000313|EMBL:RHN48494.1};
KW   Hydrolase {ECO:0000313|EMBL:RHN48494.1};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT   DOMAIN          106..171
FT                   /note="Chromo"
FT                   /evidence="ECO:0000259|PROSITE:PS50013"
FT   DOMAIN          180..254
FT                   /note="Chromo"
FT                   /evidence="ECO:0000259|PROSITE:PS50013"
FT   DOMAIN          578..743
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000259|PROSITE:PS51194"
FT   REGION          241..260
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1511 AA;  171841 MW;  BF0BB475C82390DC CRC64;
     MTSRKRNRVA DDGGISFSRC VKKLAEEYKG KTRVDPHGKN GKGDGDIVCD KCLLEGTLLF
     CCGKGCQRRY HPSCLDPLLK FLPIGFWHCL WCVEKKIKLG VHSVSKGVES ILDSREVVSK
     DKVIQREYFV KYQDLAHAHN CWIPEKQMLI EAPKLLKKYK NRKQVVRWKK DWSIPHRLLL
     KREIILSKKN AHLFDGNDDN DSVCQYEWLV KWTGLGYDHV TWELDDASFM TSSKGKELVD
     NYESRQKKSD GPSTPFEANE ESKVSFTELS ELSSGDSPGL YNQHLSYVNR LRMHWHKGQS
     AVIVDDQIDQ ERVRKMILFI LSLSCDVKKP FLIISTSTGL SAWEIEFFHL APSANLVVYK
     GKEDVRRRIR ALDFYNEDGG ILFQILLSSS DSISEDLHAL RCIPWEAIVI DECQRPMILR
     HIDNFNILAA DIRRLLLVSG QIKEDRDYIK LLSFLKSGHD ELHFSSASIS NLQSELEQYT
     VLKCNSVSSR FIEYWVPAQF SSMQLKQYCS MLLSNSMLLC SGQRSDSVGA LRELVISTKK
     CCNHPYLLNP SLNNLVTRGL PVEEHFNIGI KASGKLQLLE KILFEAKSRK LRVIILFQSS
     CGSRSIGDIL DDVLCHRFGE DCYVRYCKDY IPSKNQAALD TFNDRESGKF VFLIENRACT
     SSIKLSSVDT IILFDSDLDP QNDLKCVQKM SISSNFKQLT VLRLYSYLTV EEKVLALAKE
     GIALDRNMQL NQSSIHTLLK WGASYLFSKF DDLHGSGTSV SASGISDQSI LNDVICELSC
     KLASDSDATH SHRQSFISRV KQNGGEYARN ISLLGEREMM KLGNDTHTFS WSDLLKGRKP
     HWNFLPVSSQ RIRKTVEHFP HTAKGPKQEN DAIIRKKRTE SKDNVFPIRK NVSKDNVDPE
     KREITKDNID PKRRKLSKEI VDSKHLRKKW MNKKSRSAGK RKGKFNGAAV MKKQIPKQKK
     LHGMPKSTKL LSKPDISGLC DVLHFSKNVK AVAIRILEYV FENYNINCRE VSTVQAFEIS
     VCWIAASLLK HKIDRKHSLD LAKRHLNLDC KEEEATDVYH VLKKCEKDFS SCLQNELCVE
     KSNINGGSGS LTPELQDSVE EENQKGFQRP HVLNLVKSAA TEPDLPRKSP TTVLFSQDQI
     YTENIHNKPY VTHEISTSKI TLGNMSVEME VDASMESEAD ERINAVNSVA AEVSSLEQWD
     KVPNSSNDIN YVSPVTCSLE RQSHVVNADI TQFDGRVFID PQTLMNQLID IDNSLNMSTH
     PAQLHNVETD TVTCDRTAVA AVRQRHRIVN PVCGVSTASG FAECPLPYMQ PSHANLTPFP
     QTLSASPSFM EDLSRSVMPL DRFINHNGRD HRYIRGSEER LQALYDPVEL ASSSFVSPVT
     SQPSSYAPWN GNAIHVPHDI TNPGYMSSDP FQAHYVTYQM PHVADPDPLL IEMERIRKMN
     ESAVKTHEEK ILQLQSDYKK EFETLCEKHC MMLQNVNTAV ALKNKDLETQ RDIVLMNMIL
     ADVWVRNDSS W
//
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