ID A0A072UH30_MEDTR Unreviewed; 2099 AA.
AC A0A072UH30;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 58.
DE SubName: Full=U5 small nuclear ribonucleoprotein 200 kDa helicase {ECO:0000313|EMBL:KEH28731.1};
GN OrderedLocusNames=MTR_4g011450 {ECO:0000313|EMBL:KEH28731.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH28731.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH28731.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH28731.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH28731,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH28731.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH28731.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH28731,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH28731}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH28731};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
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DR EMBL; CM001220; KEH28731.1; -; Genomic_DNA.
DR RefSeq; XP_013454700.1; XM_013599246.1.
DR STRING; 3880.A0A072UH30; -.
DR EnsemblPlants; KEH28731; KEH28731; MTR_4g011450.
DR Gramene; KEH28731; KEH28731; MTR_4g011450.
DR HOGENOM; CLU_000335_1_0_1; -.
DR Proteomes; UP000002051; Chromosome 4.
DR ExpressionAtlas; A0A072UH30; differential.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IBA:GO_Central.
DR GO; GO:0008757; F:S-adenosylmethionine-dependent methyltransferase activity; IEA:UniProt.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProt.
DR GO; GO:0006401; P:RNA catabolic process; IBA:GO_Central.
DR CDD; cd18019; DEXHc_Brr2_1; 1.
DR CDD; cd18021; DEXHc_Brr2_2; 1.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 2.
DR Gene3D; 2.60.40.150; C2 domain; 2.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 4.
DR Gene3D; 1.10.3380.10; Sec63 N-terminal domain-like domain; 2.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR041094; Brr2_helicase_PWI.
DR InterPro; IPR048863; BRR2_plug.
DR InterPro; IPR035892; C2_domain_sf.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR014756; Ig_E-set.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR004179; Sec63-dom.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR47961; DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED; 1.
DR PANTHER; PTHR47961:SF4; U5 SMALL NUCLEAR RIBONUCLEOPROTEIN HELICASE; 1.
DR Pfam; PF21188; BRR2_plug; 1.
DR Pfam; PF00270; DEAD; 2.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF18149; Helicase_PWI; 1.
DR Pfam; PF02889; Sec63; 2.
DR PIRSF; PIRSF039073; BRR2; 2.
DR SMART; SM00382; AAA; 2.
DR SMART; SM00487; DEXDc; 2.
DR SMART; SM00490; HELICc; 2.
DR SMART; SM00973; Sec63; 2.
DR SUPFAM; SSF81296; E set domains; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 4.
DR SUPFAM; SSF158702; Sec63 N-terminal domain-like; 2.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 2.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000313|EMBL:KEH28731.1};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022728};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Ribonucleoprotein {ECO:0000313|EMBL:KEH28731.1};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT DOMAIN 488..672
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 707..900
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT DOMAIN 1335..1512
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
SQ SEQUENCE 2099 AA; 238043 MW; 1D45177A78B90ECA CRC64;
MTNLNGSAEA HARSKQYNYA SNSSLVLTSD SHPTAERTTG EPESLSGRID LKVFGDRAFR
NRPPKRNLID EFDSGGYRRN KQRRLQSESQ SVLNAVDNGV YEPKTKETRA AYEAMLSVIQ
QRFGGQPLGI IRGAADEILS ILKNDSVGDK KINIEKLLNP ITDTVFNHLV SIGKLITDFL
EFEDVEGGFD SFDGVAVEFE ENEDDDEKDV DVVVEEEEED EDEIFEIGDY AMQIGGGIVV
EEIEKVDDEE LNVHDIDAYW LQRKISPAFG PEIDPENCRR LAEEVLKVLG EADDREVEKR
LLGYFDLNKF SLVKFLMQNK LKIVWCTSLA RARDQEERDK IEEEMKGSNL ESILEELYAV
KASTIEREKN LEKSIRYEAR RLKDGDMDID RGTGDGVGEN GGQRRMLDLD NLAFEQGGLF
MTKGKCDLPD GSYRLPRKGY QEIHVPALKA KPIDPNEKLV NIGYMPDWAQ PAFKGMIQLN
RVQSKVYETA LFKSDNLLLC APTGAGKTNV AVLTILQEIA RHRNPGDGSI DHSAYKIVYV
APMKALVTEI VGNLSNRLQE YDVKVRELSG DQSLTQKQME ETQIIVTTPE KWDIITRKSG
DRIYTQLVKL LIIDEIHLLH DNRGPVLESI IARTVRQIET TKDYIRLVGL SATLPNFEDV
ARFLRVDHNK GLFYFDNSYR PVPLSQQFIG ITVKKPFQRY QLMNDICFEK VMAEAGKHQV
LIFVHSRKET AKTARAIRDT ALANDTLGRF LKEDSASREI LHSHTDLVKS NDLKDLLPYG
FAIHHAGMTR TDRQLVEDLF ASGHVQVLVS TATLAWGVNL PAHTVIIKGT KIYNPERGAW
TELSPLDVMQ MLGRAGRPQY DSCGMGIVVT GHSELQYYLS LMNQQLPIES QFISKLADQL
NAEIVLGTVQ NAKEACNWIG YTYLYVRMSR NPSLYGLAPD VVMRDITLEE RRADLIHSAA
TILDRNNLVK YDRKSGYFQA TDLGRIASYY YITHGTISTY NEHLKASMGN IELSQLFSLS
EEFKYVTVRQ DEKIELAKLL DRVPIPVKES LEDPSAKINV LLQSYISQLK LEGLSLTSDM
VFITQSAGRL LRALFEIVLK RGWAQLAEKA LNLYKMVTKR MWSAQTPLRQ FNGIPNDILT
KLEKKNLAWE KYYDLSSQEI GELIRAPKMG RILHKFIHQF PKLNLAAHVQ PITCSVLGVE
LTITPDFSWD DRVHGCVEPF WVIVEDNDGE NILHHEYFML KKQYIDENHT LNFIVPIYEP
LPPQYFIRVV SDRWLGSQTV LPVSFRHIIL PEKYPPPTEL LDLQPLPVTA LQSPSYETLY
QDFKHFNPIQ TQVFTALYNS DDNALVAAPT GSGKTICAEF AILRNHKKGS DSVMRVVYVA
PIEALAKERY RDWEKKFGGG LKFAVVELTG ETTTDLKLLE KGQIIISTPE KWDALSRRWK
QRKHVQQVSL FIIDELHLIG GQRGSVLEVI VSRMKYIANQ VENKIRFVAL STSVANAKDL
GDWIGATSHG LFNFSPVVRP VPLEIHIQSV DIANFKARMQ AMTKRTYTAI AQHAKNGKPA
LVFVPTRKHV RLTTMDLITY SSADSGEKSF LLQSTKELEP FLNKISDEML KVTLREGVGY
LHEGLSSLDH DIVAQLFEAG WIQVCVLSSS MCYIVTLLAH LVVVMGTLYY DGENAQTDYP
VTDLLQMMGH ASRPLVDHSG KCVILCHAPS KEYYKKFLFE AFPVESHLHH FLHDNLNAEI
VAGIIENKQD VVDYLTWTFM YRRLTQNPNY YNLQGVSHRH LSDYLSELVE NTLSDLEASK
CVSIEDDIHL SPLNLGMISS YYNITSEYAY LPILPGEEEV VRRLINHLRF SFESPKVKDP
HVKANALLQA HFSWQFVGGN LALDQREVLL SANKLLQALV DVISSNGWLS LALLAMEVSQ
MLTQGLWGRD SMLLQLPHFT KDLAKKCEEN PGKSIETIFD LLKMEDVARR ELLNMPNSYL
FDIARFCNRF PNVDLLYEVL QNDSVRTGPV DAPRYPKAKE EGWWLVVGDT KTNSLLAIKR
VSLQRKLKAK LQFAAPVDAG KKSYILFFMC DSYMGCDQEY SFTVDVKEAD GGDKDSSKE
//