ID A0A072UH57_MEDTR Unreviewed; 846 AA.
AC A0A072UH57;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 46.
DE SubName: Full=PHD-finger protein {ECO:0000313|EMBL:KEH28438.1};
GN Name=11423387 {ECO:0000313|EnsemblPlants:KEH28438};
GN OrderedLocusNames=MTR_5g093940 {ECO:0000313|EMBL:KEH28438.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH28438.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH28438.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH28438.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH28438,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH28438.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH28438.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH28438,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH28438}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH28438};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
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DR EMBL; CM001221; KEH28438.1; -; Genomic_DNA.
DR RefSeq; XP_013454407.1; XM_013598953.1.
DR AlphaFoldDB; A0A072UH57; -.
DR STRING; 3880.A0A072UH57; -.
DR PaxDb; 3880-AET00610; -.
DR EnsemblPlants; KEH28438; KEH28438; MTR_5g093940.
DR GeneID; 11423387; -.
DR Gramene; KEH28438; KEH28438; MTR_5g093940.
DR eggNOG; ENOG502QT38; Eukaryota.
DR OrthoDB; 459738at2759; -.
DR Proteomes; UP000002051; Chromosome 5.
DR GO; GO:0003682; F:chromatin binding; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd04370; BAH; 1.
DR CDD; cd15489; PHD_SF; 1.
DR Gene3D; 2.30.30.490; -; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR001025; BAH_dom.
DR InterPro; IPR043151; BAH_sf.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR47527; RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN; 1.
DR PANTHER; PTHR47527:SF3; RING_FYVE_PHD ZINC FINGER SUPERFAMILY PROTEIN; 1.
DR Pfam; PF01426; BAH; 1.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS51038; BAH; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 407..460
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 718..845
FT /note="BAH"
FT /evidence="ECO:0000259|PROSITE:PS51038"
FT REGION 1..40
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 271..296
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 311..334
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 471..544
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 607..678
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 21..40
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 475..494
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 505..544
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 607..649
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 650..666
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 846 AA; 91646 MW; 636D3754764E5888 CRC64;
MDDVPVSEPT LDPPPEIENG GGEQQEERLS KKAKVEENEN SEAELKRVAE IVLVLSTMAT
MRSGKKPTDV EVELMREART KLAVLCQGIA PKDIVGGEAI GSVIDDLGLN AKVVDQRLGF
RVPKMSIAEK YLFAKSKMEE SKKCAAPSTT YTSQPFQTNT GGMVDNRVPT TAVRMFASDK
SNHTSMPSTV SMASMPPHLA AGSSAPLQYQ STSNEVRPPI VSGVMPSSHM GRNPSSVAMP
RVENPQFKVT AGLSGAPYVL QVQGNFHQAS HQSHIPRGGR ANSLANQSSV NAPSWSIQTQ
PVSLGRNVSE NKAPAHNSVK VEGTADATVS RAGPQVTAAQ NIRPFITQTG PGNMSAMHQP
LQGGNMVRPP LIPSHSDIAK VVQKLLIPKL PDHPTWTPPS RDYMSKNFTC QTCELTVSEV
DSVLLCDACE KGFHLKCLQP SVIRGIHNRV DWHCMKCLGL SGGKPLPPKY GRVMRSSITS
PSFPSNSAGI QPSSEKKPDN LDPKVSPQML TTNGNSVPTD SSTNHNTEPS FDSNTPDTRD
IQGSNISSSI ETIDEKPDPN ICVKSAAYSA STGVQGEGYA EQIDSKALTC KDTSESETLP
NISELAKSGN LQSSPGSQVE NAVSQDNAEI SSDRHDSSSF IISNQKESHE GESTTYDIKR
DDLDAAQPNS VRGSGTNTEG IQHCALSSDS SHAVEWIGDV VQLVDEKKHY QSCCIDGVTY
RLQGHAFFTS SHGKLTPSKL QSMWEDSKTG VKWVKVTKCY FPDDLPGNIG HPCISEVNEV
YESNSDRVEM ASSIRGPCVV LPYDKFKQEN DRRCQFGVEA SASVQPIFLC RWFYDEIKKS
FQPVIS
//
