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Database: UniProt
Entry: A0A077RX37_WHEAT
LinkDB: A0A077RX37_WHEAT
Original site: A0A077RX37_WHEAT 
ID   A0A077RX37_WHEAT        Unreviewed;       643 AA.
AC   A0A077RX37;
DT   29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT   29-OCT-2014, sequence version 1.
DT   24-JAN-2024, entry version 54.
DE   RecName: Full=ATP-dependent RNA helicase {ECO:0000256|RuleBase:RU365068};
DE            EC=3.6.4.13 {ECO:0000256|RuleBase:RU365068};
GN   ORFNames=CFC21_040093 {ECO:0000313|EMBL:KAF7028130.1},
GN   TRAES_3BF091200130CFD_c1 {ECO:0000313|EMBL:CDM81594.1};
OS   Triticum aestivum (Wheat).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
OX   NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM81594.1};
RN   [1] {ECO:0000313|EMBL:CDM81594.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=25035497; DOI=10.1126/science.1249721;
RA   Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J.,
RA   Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S.,
RA   Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., Poulain J.,
RA   Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., Rogers J.,
RA   Vandepoele K., Aury J.M., Mayer K., Berges H., Quesneville H., Wincker P.,
RA   Feuillet C.;
RT   "Structural and functional partitioning of bread wheat chromosome 3B.";
RL   Science 345:1249721-1249721(2014).
RN   [2] {ECO:0000313|EMBL:KAF7028130.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Leaf {ECO:0000313|EMBL:KAF7028130.1};
RX   PubMed=29069494;
RA   Zimin A.V., Puiu D., Hall R., Kingan S., Clavijo B.J., Salzberg S.L.;
RT   "The first near-complete assembly of the hexaploid bread wheat genome,
RT   Triticum aestivum.";
RL   Gigascience 6:1-7(2017).
RN   [3] {ECO:0000313|EnsemblPlants:TraesCS3B02G116900.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Chinese Spring
RC   {ECO:0000313|EnsemblPlants:TraesCS3B02G116900.1};
RX   PubMed=30115783; DOI=10.1126/science.aar7191;
RG   International wheat genome sequencing consortium (IWGSC);
RT   "Shifting the limits in wheat research and breeding using a fully annotated
RT   reference genome.";
RL   Science 361:EAAR7191-EAAR7191(2018).
RN   [4] {ECO:0000313|EnsemblPlants:TraesCS3B02G116900.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (OCT-2018) to UniProtKB.
RN   [5] {ECO:0000313|EMBL:KAF7028130.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Leaf {ECO:0000313|EMBL:KAF7028130.1};
RA   Zimin A.V., Puiu D., Shumante A., Alonge M., Salzberg S.L.;
RT   "The second near-complete assembly of the hexaploid bread wheat (Triticum
RT   aestivum) genome.";
RL   Submitted (MAR-2020) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: RNA helicase. {ECO:0000256|RuleBase:RU365068}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC         Evidence={ECO:0000256|RuleBase:RU365068};
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD box
CC       family of RNA helicases and controls ATP binding and hydrolysis.
CC       {ECO:0000256|RuleBase:RU365068}.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX55/SPB4
CC       subfamily. {ECO:0000256|ARBA:ARBA00038002}.
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DR   EMBL; HG670306; CDM81594.1; -; Genomic_DNA.
DR   EMBL; CM022218; KAF7028130.1; -; Genomic_DNA.
DR   SMR; A0A077RX37; -.
DR   STRING; 4565.A0A077RX37; -.
DR   PaxDb; 4565-Traes_3B_F38C26873-1; -.
DR   EnsemblPlants; TraesCS3B02G116900.1; TraesCS3B02G116900.1; TraesCS3B02G116900.
DR   Gramene; TraesCLE_scaffold_113289_01G000100.1; TraesCLE_scaffold_113289_01G000100.1; TraesCLE_scaffold_113289_01G000100.
DR   Gramene; TraesCS3B02G116900.1; TraesCS3B02G116900.1; TraesCS3B02G116900.
DR   Gramene; TraesCS3B03G0267300.1; TraesCS3B03G0267300.1.CDS; TraesCS3B03G0267300.
DR   Gramene; TraesKAR3B01G0068280.1; cds.TraesKAR3B01G0068280.1; TraesKAR3B01G0068280.
DR   Gramene; TraesROB_scaffold_071537_01G000100.1; TraesROB_scaffold_071537_01G000100.1; TraesROB_scaffold_071537_01G000100.
DR   eggNOG; KOG0345; Eukaryota.
DR   HOGENOM; CLU_003041_26_4_1; -.
DR   OMA; IQFEDHM; -.
DR   OrthoDB; 149428at2759; -.
DR   Proteomes; UP000019116; Chromosome 3B.
DR   Proteomes; UP000815260; Chromosome 3B.
DR   GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   CDD; cd17960; DEADc_DDX55; 1.
DR   CDD; cd18787; SF2_C_DEAD; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR025313; DUF4217.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000629; RNA-helicase_DEAD-box_CS.
DR   PANTHER; PTHR24031:SF2; ATP-DEPENDENT RNA HELICASE DDX55; 1.
DR   PANTHER; PTHR24031; RNA HELICASE; 1.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF13959; DUF4217; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM01178; DUF4217; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   PROSITE; PS00039; DEAD_ATP_HELICASE; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
PE   3: Inferred from homology;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|RuleBase:RU000492};
KW   Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000256|RuleBase:RU000492};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|RuleBase:RU000492};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741,
KW   ECO:0000256|RuleBase:RU000492};
KW   Reference proteome {ECO:0000313|Proteomes:UP000019116};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|RuleBase:RU365068}.
FT   DOMAIN          55..233
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000259|PROSITE:PS51192"
FT   DOMAIN          271..427
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000259|PROSITE:PS51194"
FT   REGION          506..562
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          585..643
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   643 AA;  71678 MW;  57426E8D5CEB88D5 CRC64;
     MASSSSPSPA TAAARKRALT EQRFSELTPA LSLEVVEALD RGGFRRCTPV QAATIPLLLT
     HKDVAVDAAT GSGKTLAFVV PVVEMLRRLP SPPKPHQVLA IIISPTRELS SQIYNVAQPF
     FATLKGVSSI LLVGGLDIKV ELEKVEKEGA NILVGTPGKL FDIMERLDTL EYKHLEILIL
     DEADRLLDMG FQKQVTSIIS KLPKLRRTGL FSATQTEAVE ELAKAGLRNP VRVQVKTEAK
     DAAQQDLGPS KTPLGLRLEY MICEPAKKSS QLVDFLVQNT GKKIMVYFAT CACVDYWSVV
     LPMLNLLKGS PVIAYHGKMK QGPREKALAS FSALSSGILV CTDVAARGLD IPHVDLIVQY
     DPPQDPNVFV HRAGRTARYD QEGDAIVFLL PTEDAYVEFL KLRGVPLMER ECSPDIVDIV
     PQIRAAALED RNIMEKGLRA FVSFVRSYKE HHCSFIFRWK GLEVGKLAME YGLLQIPSMP
     EVKHNNLSLK GFFPLGNIDF SQIKFKDKTR EKQRQKALKR KAEELANEPP VPEKRVPRER
     PDKPKRKQTG KQRQTIQTKE DMDELTNEYR LLKKLKRGVI DEDEYEKLTG FGGSDGEGSD
     GDAAGKGKGK ERRSKEQKKL KQRGGKTGGR RFEVKSKLKS KRR
//
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