ID A0A078FR28_BRANA Unreviewed; 863 AA.
AC A0A078FR28;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE SubName: Full=BnaC04g43010D protein {ECO:0000313|EMBL:CDY15322.1};
GN Name=BnaC04g43010D {ECO:0000313|EMBL:CDY15322.1};
GN ORFNames=GSBRNA2T00085598001 {ECO:0000313|EMBL:CDY15322.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY15322.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY15322.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; LK032054; CDY15322.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A078FR28; -.
DR STRING; 3708.A0A078FR28; -.
DR PaxDb; 3708-A0A078FR28; -.
DR EnsemblPlants; CDY15322; CDY15322; GSBRNA2T00085598001.
DR Gramene; CDY15322; CDY15322; GSBRNA2T00085598001.
DR OMA; DEAGHNE; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0000176; C:nuclear exosome (RNase complex); IBA:GO_Central.
DR GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR GO; GO:0000175; F:3'-5'-RNA exonuclease activity; IBA:GO_Central.
DR GO; GO:0003690; F:double-stranded DNA binding; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0003727; F:single-stranded RNA binding; IBA:GO_Central.
DR GO; GO:0006265; P:DNA topological change; IEA:InterPro.
DR GO; GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IBA:GO_Central.
DR GO; GO:0071044; P:histone mRNA catabolic process; IBA:GO_Central.
DR GO; GO:0071040; P:nuclear polyadenylation-dependent antisense transcript catabolic process; IBA:GO_Central.
DR GO; GO:0071039; P:nuclear polyadenylation-dependent CUT catabolic process; IBA:GO_Central.
DR GO; GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IBA:GO_Central.
DR GO; GO:0071036; P:nuclear polyadenylation-dependent snoRNA catabolic process; IBA:GO_Central.
DR GO; GO:0071037; P:nuclear polyadenylation-dependent snRNA catabolic process; IBA:GO_Central.
DR GO; GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IBA:GO_Central.
DR GO; GO:0071051; P:polyadenylation-dependent snoRNA 3'-end processing; IBA:GO_Central.
DR CDD; cd06147; Rrp6p_like_exo; 1.
DR Gene3D; 1.10.150.80; HRDC domain; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR002121; HRDC_dom.
DR InterPro; IPR044876; HRDC_dom_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR045092; Rrp6-like.
DR InterPro; IPR049559; Rrp6p-like_exo.
DR InterPro; IPR018126; SASP_alpha/beta-type_CS.
DR PANTHER; PTHR12124:SF71; HRDC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR12124; POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF00570; HRDC; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SUPFAM; SSF47819; HRDC-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50967; HRDC; 1.
DR PROSITE; PS00304; SASP_1; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000028999}.
FT DOMAIN 350..431
FT /note="HRDC"
FT /evidence="ECO:0000259|PROSITE:PS50967"
FT REGION 721..778
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 863 AA; 97744 MW; 02EB75314D49D8DE CRC64;
MVVNEKVQLA ITVASLVAAT VLFAAEYRRR RRKPTSSPSS CYLRSETKPQ FGFKRVLADN
SYSGFKHLKK KKLEDGGDKP LNSHPYESEI TALLENPRLD EFEFLRGEYS LEMSDSYVWV
ETESELKKLA ETLAKEKVFA VDTEQHSLRS FLGFTALIQI STQEEDFLVD TIALHDVMSI
LRPVFSNPDI CKVFHGADND VIWLQRDFHI YVVNMFDTAK ACEVLAKPQR SLAYLLESVC
GVSTNKLLQR EDWRQRPLSE EMVRYARTDA HYLLYIADTM TAELRQLGTE DSSSTDDKFS
FLLEASRRSN MTCLQLYTKE TEDFPGNAAA SSLIYRHLNG HEDNSTISLD PKFQELVREL
CAWRDLMARI HDESTRYVLS DQAVIALASN HPSTPEEIHD SIAQADLASD STPSAVICSH
LDDVFQLTQH KLGKLDVILP LVLDKCLGTE GTCPISVFNY SLLINFNTKL TTNRSTPKRH
KSLKRFTRKT SRDLFVKKFS CKAPVYHNCR IYANDGRLLC YCDRRKLEWY MSRGLAKLVE
EDPLAIMLLF EPKGRPEDEG NDFYIQSKKN ICVGCGEGDH YLRYRIIPSC YRVHFPEHLK
SHRSHDIVLL CVDCHEVAHA AAERYKKEVA KEFGIPLFVR RVLDSVECES SAGGDSEDAG
VSPLHLRTAA MALLRHGNRM PSSRREELLQ TVKMYYGGRD ITEEDLEKAL LIGMSPHERR
KLERKKGVSL KQENSSNDAD ANSFEEAPPG GDTNGESSVV GDDSGGDGAP ELNDTQCNGN
ILHQQNSKLS LLGHGPHGKQ VVEYLLNEYG EDGVRDFCQR WRKVFVDALH PRHLPGGWDV
THSGRRDFGE FSVYNPTKKV STG
//
