ID A0A078GNC3_BRANA Unreviewed; 1305 AA.
AC A0A078GNC3;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE SubName: Full=BnaA02g18660D protein {ECO:0000313|EMBL:CDY26841.1};
GN Name=BnaA02g18660D {ECO:0000313|EMBL:CDY26841.1};
GN ORFNames=GSBRNA2T00036500001 {ECO:0000313|EMBL:CDY26841.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY26841.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY26841.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
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DR EMBL; LK032195; CDY26841.1; -; Genomic_DNA.
DR STRING; 3708.A0A078GNC3; -.
DR PaxDb; 3708-A0A078GNC3; -.
DR EnsemblPlants; CDY26841; CDY26841; GSBRNA2T00036500001.
DR Gramene; CDY26841; CDY26841; GSBRNA2T00036500001.
DR OMA; QEMSTHR; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd15571; ePHD; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 4.
DR InterPro; IPR034732; EPHD.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR13793:SF107; PHD FINGER FAMILY PROTEIN; 1.
DR PANTHER; PTHR13793; PHD FINGER PROTEINS; 1.
DR Pfam; PF13831; PHD_2; 2.
DR Pfam; PF13832; zf-HC5HC2H_2; 2.
DR SMART; SM00249; PHD; 4.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 2.
DR PROSITE; PS51805; EPHD; 2.
DR PROSITE; PS01359; ZF_PHD_1; 2.
DR PROSITE; PS50016; ZF_PHD_2; 2.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Methyltransferase {ECO:0000256|ARBA:ARBA00022603};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW Transferase {ECO:0000256|ARBA:ARBA00022603};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 242..293
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 300..421
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS51805"
FT DOMAIN 905..954
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 967..1073
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS51805"
FT REGION 74..97
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 454..510
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 625..651
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 694..725
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 835..869
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1131..1169
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1285..1305
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 78..92
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 461..477
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 478..492
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 630..651
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 696..710
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 711..725
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1140..1169
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1305 AA; 144640 MW; C1AAB5DCF0DA1176 CRC64;
MNVDQCQWPE KMMCMGVDGG CGAEEKENDK GVDLLAQASK HLSERSPYDV PEDGLALGLS
VSTLPVVLAN LLNQKDDKKR HKKSHHGTET KKKKSSRVGE KLRAGSIWVE HDDYFRRLEA
PDLETLSDLA SLRSLSSRNC FLVPSASIQQ RETDATARNE DAVCGEETKD ILSEGVNEVV
GHQPMSVDNV GDEISSGGLE WIVGCRNRIL LTSERPSKKR RRLGSDAGLE KLVVAAPCRG
NALLCDFCCT GEAKGYHRQL IVCTSCKATV HKKCYGVVED TDKTWLCSWC ELENGGGDSE
RPCSLCPKKG GVLKPVLSKT ENGGPPEFAH LYCSLWMPEV YIEDLNKMEP ILNLPGIKET
RRKLLCNLCK VKSGACTRCC YATCRASFHP ICAREAGNRL EIWGKHGCDT VELRAFCSKH
SDIQDSGRPI NGGNINAADP PVCHLPTESI RDRLSNDETG VEVGAQGTGS DISRNSELQE
LESPRSEFDR SATDIVESGM TERSTDNEKK TRSESLSFVL ILKKLINLGK VDVKDVAAEI
GVTPDALNAK LMDGDLLPDL LGKIVKWLSQ HAHMGTRDKC GNIKTKANNP VLKKEISGNF
PSDHSPEEQK PVVLDQEFRL GKNTVHLSDN HGEKSNPSSS GLMVENAFSV GPNSSQNRGI
LNDPSPMILD LLDHEAYPGF NPHPYIHKEL SEMGKGKTVK SSTDSYVDRM TSEPDGSEEG
TKHLQDAGDH TTYTFCRLAK ARKLGILDMS PKDEVEGELL YYQLQLLGTG VSRKQLSDDL
AYAVTKKLPL EIDEQHGRIW DDVLVNKYFH DVREARKQGR KEKRHKEAQA VLAAATQAAA
TSSRNTSLRK DMAEEPAQQE MSTHRRGSAH LVPQTKETLL KVPVSGPPSE KRSDQRTREF
SLENPRSCDI CRRSETIWNL IVVCSSCKVA VHMDCYKCAK ESTGPWYCEL CAESTGSFNF
WEKPYSTTEC ALCGGTTGAF RKATDGQWVH AFCAEWSLES TFRRGQINPV QGMESLAKNT
NTCCVCQRIY GACIKCSYGN CQTTFHPTCA RSARFHMTGG GKLPHKAYCE KHSLEQKAKA
KSQKHEAAEQ KSLKHYRVEL ERLRLLCERI VKREKLKREL AVSSHEILAA RRDHAARNPS
SPPEVSSDSA TTSIKGYPDS NISGSEAIQR SDDITIDSTA SVKQRRGKGL VLIDTDQKTD
DSATSRGRFT RNPTESQLFS VKTVPRKHCI VSPSVSEEGD EESETKKHVE TFAKELVMTS
DEASFKNRRL PKGYFYVPVD CLQEDKPDSS DKPINQTVPY GECEI
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