ID A0A078GW98_BRANA Unreviewed; 893 AA.
AC A0A078GW98;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 35.
DE SubName: Full=BnaA06g13890D protein {ECO:0000313|EMBL:CDY29407.1};
GN Name=BnaA06g13890D {ECO:0000313|EMBL:CDY29407.1};
GN ORFNames=GSBRNA2T00043001001 {ECO:0000313|EMBL:CDY29407.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY29407.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY29407.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; LK032236; CDY29407.1; -; Genomic_DNA.
DR RefSeq; XP_013641865.1; XM_013786411.1.
DR RefSeq; XP_013641866.1; XM_013786412.1.
DR AlphaFoldDB; A0A078GW98; -.
DR STRING; 3708.A0A078GW98; -.
DR PaxDb; 3708-A0A078GW98; -.
DR EnsemblPlants; CDY29407; CDY29407; GSBRNA2T00043001001.
DR GeneID; 106346939; -.
DR Gramene; CDY29407; CDY29407; GSBRNA2T00043001001.
DR KEGG; bna:106346939; -.
DR OMA; RCLHHFK; -.
DR OrthoDB; 982363at2759; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 11.
DR PANTHER; PTHR24015:SF739; OS03G0644200 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF81901; HCP-like; 1.
DR PROSITE; PS51375; PPR; 9.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 145..179
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 246..280
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 281..315
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 316..350
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 386..416
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 417..451
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 452..486
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 488..522
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 589..623
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 812..893
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 893 AA; 101052 MW; 3F33B415AD1DFDA4 CRC64;
MEKLFIPSFP KTCLNYQIPA KVETSPESHP KSRKKNLSFV KKKQPIITPD EQLDFLCRNG
SLLEAEKALD SMFQQGTKMK RSTYLNLLES CIDSGSVHLG RILHARFDQF PQPDVFVETK
LLSMYAKCGC LVDARKVFDS MRERNLYTWS AMIGAYSREH RWREVSNLFR MMMEDGVLPD
DFLFPKILQG CANCGDVETG KLIHSVVVKL GMTSCLRVSN SILAVYAKCG ELSLATKFFR
RMEERDVVAW NSVLLAYCHN GKHEEAVDLV EEMEKEGISP GLVTWNILIG GYNQLGKCDA
AIDLMQKMES FGVTADVFTW TAMISGLIHN GKRYQALDTF RKMFLAGVVP NGVTIMSAVS
ACSCLKILNL GSEVHSIAVK MGFMDDVLVG NSLVDMYSKC GKLEEARKVF DSIKNKDVYT
WNSMITGYCQ AEYCGKAYEL FTRMQEENVK PNIITWNTMI SGYIQNGDEG EAMDLFQRME
KDGNVQRNTA SWNLIIAGYI QNGKKDEALE LFRKMQFSRF MPNSVTILSL LPASANLLGA
RMVREIHGCV LRRNLDAVHA VKNALIDTYA KSGDIGYART VFKGMKTKDI ITWNSLIGGY
VLHGSYGPAL DLFDQMKTEE IKPNRGTLSS IILAHGLMGN VEQGKKVFSS IANDYHIIPA
LEHCCAMVSL YGRSNRLEEA LQFIQEMNVQ SEPPIWESFL TACRIHGDID SAIHAAEHLF
SLEPENPVTE NLVSQIYALG ARLGRSLEGK KPRKEKLLKK HLGQSWIEAR NLVHTFTTGD
QSKLCTDVLY PWVEKLCRMD DRNDQYNGEL LIEEEGREKT CGIHSEKFAM AFGLISSSRE
PKTIRILKNL RMCRDCHNIA KYISKRYSCE ILLEDTRCLH HFKNGDCSCK DYW
//
