ID A0A078HJT9_BRANA Unreviewed; 182 AA.
AC A0A078HJT9;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 23.
DE SubName: Full=(rape) hypothetical protein {ECO:0000313|EMBL:CAF1886613.1};
DE SubName: Full=BnaC02g06460D protein {ECO:0000313|EMBL:CDY38127.1};
GN Name=BnaC02g06460D {ECO:0000313|EMBL:CDY38127.1};
GN ORFNames=DARMORV10_C02P08210.1 {ECO:0000313|EMBL:CAF1886613.1},
GN GSBRNA2T00065410001 {ECO:0000313|EMBL:CDY38127.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY38127.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY38127.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
RN [2] {ECO:0000313|EMBL:CDY38127.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:CAF1886613.1}
RP NUCLEOTIDE SEQUENCE.
RG Genoscope - CEA;
RA William W.;
RL Submitted (JAN-2021) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; HG994366; CAF1886613.1; -; Genomic_DNA.
DR EMBL; LK032416; CDY38127.1; -; Genomic_DNA.
DR STRING; 3708.A0A078HJT9; -.
DR PaxDb; 3708-A0A078HJT9; -.
DR EnsemblPlants; CDY38127; CDY38127; GSBRNA2T00065410001.
DR Gramene; CDY38127; CDY38127; GSBRNA2T00065410001.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0071013; C:catalytic step 2 spliceosome; IBA:GO_Central.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0005686; C:U2 snRNP; IBA:GO_Central.
DR GO; GO:0071004; C:U2-type prespliceosome; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:InterPro.
DR Gene3D; 1.10.10.790; Surp module; 2.
DR InterPro; IPR045146; SF3A1.
DR InterPro; IPR000061; Surp.
DR InterPro; IPR035967; SWAP/Surp_sf.
DR PANTHER; PTHR15316; SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED; 1.
DR PANTHER; PTHR15316:SF1; SPLICING FACTOR 3A SUBUNIT 1; 1.
DR Pfam; PF01805; Surp; 2.
DR SMART; SM00648; SWAP; 2.
DR SUPFAM; SSF109905; Surp module (SWAP domain); 2.
DR PROSITE; PS50128; SURP; 2.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 165..181
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 11..54
FT /note="SURP motif"
FT /evidence="ECO:0000259|PROSITE:PS50128"
FT DOMAIN 79..121
FT /note="SURP motif"
FT /evidence="ECO:0000259|PROSITE:PS50128"
SQ SEQUENCE 182 AA; 21246 MW; 6F0F4933283E925E CRC64;
MFTTQPEKTS FIEEVARLVS QKGLETERTL MAVNNDNDKK FSFLLRSDPC HAYYQHKLNY
YRKEAQVTRP HAPATTTTHD CSVAMFVARY GENFRRDLME TVFMNPLFEF LRPTDCKCSS
FFTSLLRVYS TVIMPSDMLW NGDDSTAYAL EFFSSWRSSR TVRRRLLLIC MGLWVVLTVL
VT
//
