ID A0A078I5G9_BRANA Unreviewed; 988 AA.
AC A0A078I5G9;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE SubName: Full=(rape) hypothetical protein {ECO:0000313|EMBL:CAF2102449.1};
DE SubName: Full=BnaA05g28820D protein {ECO:0000313|EMBL:CDY44724.1};
GN Name=BnaA05g28820D {ECO:0000313|EMBL:CDY44724.1};
GN ORFNames=DARMORV10_A05P39390.1 {ECO:0000313|EMBL:CAF2102449.1},
GN GSBRNA2T00080703001 {ECO:0000313|EMBL:CDY44724.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY44724.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY44724.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
RN [2] {ECO:0000313|EMBL:CDY44724.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:CAF2102449.1}
RP NUCLEOTIDE SEQUENCE.
RG Genoscope - CEA;
RA William W.;
RL Submitted (JAN-2021) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; HG994359; CAF2102449.1; -; Genomic_DNA.
DR EMBL; LK032599; CDY44724.1; -; Genomic_DNA.
DR STRING; 3708.A0A078I5G9; -.
DR PaxDb; 3708-A0A078I5G9; -.
DR EnsemblPlants; CDY44724; CDY44724; GSBRNA2T00080703001.
DR Gramene; CDY44724; CDY44724; GSBRNA2T00080703001.
DR OMA; MTCHLGD; -.
DR OrthoDB; 1352at2759; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IBA:GO_Central.
DR GO; GO:0000460; P:maturation of 5.8S rRNA; IBA:GO_Central.
DR GO; GO:0006401; P:RNA catabolic process; IBA:GO_Central.
DR CDD; cd18024; DEXHc_Mtr4-like; 1.
DR CDD; cd13154; KOW_Mtr4; 1.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.3380.30; -; 1.
DR Gene3D; 2.40.30.300; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR048392; MTR4-like_stalk.
DR InterPro; IPR025696; MTR4_beta-barrel.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR016438; SKI2-like.
DR InterPro; IPR012961; Ski2/MTR4_C.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF32; DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH10; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08148; DSHCT; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF21408; MTR4-like_stalk; 1.
DR Pfam; PF13234; MTR4_beta-barrel; 1.
DR PIRSF; PIRSF005198; Antiviral_helicase_SKI2; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01142; DSHCT; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999}.
FT DOMAIN 85..241
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 319..520
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..37
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 285..315
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 12..37
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 988 AA; 110961 MW; 44952368ADD1E83B CRC64;
MSTIMESPET LGKRKASSDE TPTPEPTTKR RSSQKRACVH EVAVPNGYTP SKEEAIHGTL
DNPLYNGDMA KTYPFQLDPF QSISVACLER KESILVSAHT SAGKTAVAEY AIAMAFRDKQ
RVIYTSPLKA LSNQKYRELQ HEFHDVGLMT GDVTISPNAS CLVMTTEILR AMLYRGSEVL
KEVAWVIFDE IHYMKDRERG VVWEESIIFL PPAIKMVFLS ATMSNATEFA EWICYLHKQP
CHVVYTDFRP TPLQHYAFPM GGSGLYLVVD ENEQFREANF IKMHDTFPKP KSEGKKSANG
KSGGRGGAKG GGGGGGDSDV YKIVKMIMER KFQPVIIFSF SRRECENHAL SMSKLDFNTE
EEKSTVEEVF NNAMLCLNEE DRSLSAIEMM LPLLQRGIAV HHSGLLPVLK ELVELLFQEG
LVKALFATET FAMGLNMPAK TVVFTAVKKW DGDSHRFIGS GEYIQMSGRA GRRGKDERGI
CIIMIDEQME MDVLKDMMLG KPAPLLSTFR LSYYTILNLL SRAEGQFTAE HVIKHSFHQF
QYEKALPDIE NKVTKLEEEA AILDASGKAE VAEYHKLKLD IAPLEKKLMS EIIRPERVLC
FLDTGRLVKI REGGTDWGWG VVVNVVKKTS VGTSSQGGGY IVDTLLHCST GVSENGAKPK
PCPPRPGEKG EMHVVPVQLP LITALSRLRI SVPSDLRPLE ARQSILLAVQ ELSSRFPLGF
PKLHPVKDMN IQDTEIVELV SQIEEAEQKL LAHPMHKSED DQQMKSFQRK AEVNYEIQQF
KSKMRDSQLQ KFRDELRNRS RVLKKLGHID ADGVVQLKGR AACLIDTGDE LLVTELMFNG
TFNDLDHHQV AALASCFIPV DKSNEKVELK NELNRPLQQL KDSARRIAEI QHECKLEIDV
EEYVESTIRE GLMDVIYCWS TGSTFAEVMN KTDIFEGSII RSARRLDEFL NQLRLAAEAV
GENNLASKFA AASESLRRGI MFANSLYL
//
