ID A0A078IFB6_BRANA Unreviewed; 856 AA.
AC A0A078IFB6;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 31.
DE SubName: Full=BnaCnng16790D protein {ECO:0000313|EMBL:CDY48702.1};
GN Name=BnaCnng16790D {ECO:0000313|EMBL:CDY48702.1};
GN ORFNames=GSBRNA2T00091588001 {ECO:0000313|EMBL:CDY48702.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY48702.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY48702.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; LK032787; CDY48702.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A078IFB6; -.
DR STRING; 3708.A0A078IFB6; -.
DR PaxDb; 3708-A0A078IFB6; -.
DR EnsemblPlants; CDY48702; CDY48702; GSBRNA2T00091588001.
DR Gramene; CDY48702; CDY48702; GSBRNA2T00091588001.
DR OMA; PCKHAPE; -.
DR OrthoDB; 992745at2759; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR InterPro; IPR007021; DUF659.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR PANTHER; PTHR32166:SF105; HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR32166; OSJNBA0013A04.12 PROTEIN; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF04937; DUF659; 1.
DR Pfam; PF02892; zf-BED; 2.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50808; ZF_BED; 2.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00027}.
FT DOMAIN 8..64
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
FT DOMAIN 131..187
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
FT REGION 82..126
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 804..856
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 82..116
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 805..831
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 856 AA; 97921 MW; 0C97D82F240D9621 CRC64;
MAPPGTTGAV DPGWEHGVAL DDRKKKVKCN YCGKIVSGGI YRLKQHLARI SGEVTYCDKS
PEDVSLRMKQ ILQRCRSARK LRQPDDDDYN ANGPSCHHHH VDDVEEEEEG LSRRSKGKKK
QQSFSLLRSS GYVDPGWEHG VAQDERKKKV KCNYCGKVVS GGINRFKQHL ARIPGEVAPC
KAAPEEVFVK IKENMKWHRA GKRQNVPDDD GCHVRALTVY HDPEQEEDGE EEDDFYGRFS
KDKRRSFDST NTRLVSEARP KRTRMNSFQY TGCSSRATVS RREVTSSISK FFHHVGVPLE
AANSLYFQKM VELIGLYGEG YVVPSSQLFS GRLLHDQMST IKGHLRDYRS SWIVTGCSIL
ADTWTNAEGK TMIGFLVSCP RGVYFHSSID ATDVAEDSLS LFNYLDKLVE DIGEENVVQV
ITQNTSICRS AGKLLEEKRK NLYWSPCAMH STELVLEDIS KLEYVSECLE KSQRITRLIY
NQTWLLNLMK NEFTQGMDLL KPETTRHASS FATLQTLMDH KANLRALFQS NSWILSQKSE
EGREVEKIVS SAAFWKKVQY VLKSVDPVMQ VIRMGGGDGG ERLYLPYAYG YMCCAKMGIK
SVHSDDARKY GPFWRVIDYH WNSLFHHPLY VAAYFFNPAY RYRSDFMAHS EVVRGVNECI
VRLEPDNARR ITALMQIPDY TSAKGDFGTE LAIGTRTELD PAAWWQQHGI SCLELQRVAV
RILSHTCCSV GCETKWSVYD QVSGECQSRF ARKSRRDLAY VHYNLRLREK QMKRRMHDEG
PPQSLNYVLL DRLLPDWLMT CEKEEEEGLQ DEDGAEKDDQ EEEEEEENCY DDSANNVYGD
GEDNVDVYND DLSDDD
//
