ID A0A078IKX0_BRANA Unreviewed; 526 AA.
AC A0A078IKX0;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 41.
DE SubName: Full=BnaC02g46780D protein {ECO:0000313|EMBL:CDY50671.1};
GN Name=BnaC02g46780D {ECO:0000313|EMBL:CDY50671.1};
GN ORFNames=GSBRNA2T00097230001 {ECO:0000313|EMBL:CDY50671.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY50671.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY50671.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
CC -!- SIMILARITY: Belongs to the pseudouridine synthase TruB family.
CC {ECO:0000256|ARBA:ARBA00008999}.
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DR EMBL; LK032930; CDY50671.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A078IKX0; -.
DR STRING; 3708.A0A078IKX0; -.
DR PaxDb; 3708-A0A078IKX0; -.
DR EnsemblPlants; CDY50671; CDY50671; GSBRNA2T00097230001.
DR Gramene; CDY50671; CDY50671; GSBRNA2T00097230001.
DR OMA; CIVRLHD; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0031429; C:box H/ACA snoRNP complex; IBA:GO_Central.
DR GO; GO:0009982; F:pseudouridine synthase activity; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0000495; P:box H/ACA RNA 3'-end processing; IBA:GO_Central.
DR GO; GO:1990481; P:mRNA pseudouridine synthesis; IBA:GO_Central.
DR GO; GO:0031118; P:rRNA pseudouridine synthesis; IBA:GO_Central.
DR GO; GO:0031120; P:snRNA pseudouridine synthesis; IBA:GO_Central.
DR CDD; cd02572; PseudoU_synth_hDyskerin; 1.
DR CDD; cd21148; PUA_Cbf5; 1.
DR Gene3D; 3.30.2350.10; Pseudouridine synthase; 1.
DR Gene3D; 2.30.130.10; PUA domain; 2.
DR InterPro; IPR012960; Dyskerin-like.
DR InterPro; IPR020103; PsdUridine_synth_cat_dom_sf.
DR InterPro; IPR002501; PsdUridine_synth_N.
DR InterPro; IPR002478; PUA.
DR InterPro; IPR015947; PUA-like_sf.
DR InterPro; IPR036974; PUA_sf.
DR InterPro; IPR004802; tRNA_PsdUridine_synth_B_fam.
DR InterPro; IPR032819; TruB_C.
DR NCBIfam; TIGR00425; CBF5; 1.
DR PANTHER; PTHR23127; CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5; 1.
DR PANTHER; PTHR23127:SF2; PUA DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF08068; DKCLD; 1.
DR Pfam; PF01472; PUA; 1.
DR Pfam; PF16198; TruB_C_2; 1.
DR Pfam; PF01509; TruB_N; 1.
DR SMART; SM01136; DKCLD; 1.
DR SMART; SM00359; PUA; 1.
DR SUPFAM; SSF55120; Pseudouridine synthase; 1.
DR SUPFAM; SSF88697; PUA domain-like; 1.
DR PROSITE; PS50890; PUA; 1.
PE 3: Inferred from homology;
KW Isomerase {ECO:0000256|ARBA:ARBA00023235};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999}.
FT DOMAIN 26..84
FT /note="Dyskerin-like"
FT /evidence="ECO:0000259|SMART:SM01136"
FT DOMAIN 275..363
FT /note="PUA"
FT /evidence="ECO:0000259|SMART:SM00359"
FT REGION 388..526
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 397..510
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 526 AA; 58724 MW; 5B7C44DB9BF1DF75 CRC64;
MTEVEEVAAE TGDYMIKPQS FTPAIDTSQW PLLLKNYDRL NVRTGHYTPI SSGHSPLKRP
LLDYIRYGVI NLDKPSNPSS HEVVAWIKRI LRVEKTGHSG TLDPKVTGNL IVCIDRATRL
VKSQQGAGKE YVCVARLHSA VPDVAKVARA LESLTGAVFQ RPPLISAVKR QLRIRTIYQS
KLLEYDADRH LVVFWVSCEA GTYIRTMCVH LGLLLGVGGH MQELRRVRSG ILGENDNMVT
MHDVMDAQWM YDNHKDESYL RRVIMPLEVI LTSYKRLVVK DSAVNAICYG AKLMIPGLLR
FENDIDVGTE VVLMTTKGEA IAIKRVVMDR DTYPRKWGLG PRASMKKKLI ADGKLDKHGK
PNEKTPLEWS RNVVVLPTGG DAMIAGAAAA PEGKVEAESG QVRKRKHDDS TDTPAPVSTK
KAKTKDLEGG EVEEKKKEKK KKKDKEEDKE ELATPKSEKK KKKKSKEADE AAAANGEDES
AAEKSEKKKK KKSKETDEAA ACQSAEKSEK KKKKDKKKKT KDSDDE
//