ID A0A078JII3_BRANA Unreviewed; 1324 AA.
AC A0A078JII3;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 46.
DE SubName: Full=BnaA09g54650D protein {ECO:0000313|EMBL:CDY66534.1};
GN Name=BnaA09g54650D {ECO:0000313|EMBL:CDY66534.1};
GN ORFNames=GSBRNA2T00054504001 {ECO:0000313|EMBL:CDY66534.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY66534.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY66534.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
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DR EMBL; LK035312; CDY66534.1; -; Genomic_DNA.
DR SMR; A0A078JII3; -.
DR STRING; 3708.A0A078JII3; -.
DR PaxDb; 3708-A0A078JII3; -.
DR EnsemblPlants; CDY66534; CDY66534; GSBRNA2T00054504001.
DR Gramene; CDY66534; CDY66534; GSBRNA2T00054504001.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0016593; C:Cdc73/Paf1 complex; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:1990269; F:RNA polymerase II C-terminal domain phosphoserine binding; IBA:GO_Central.
DR CDD; cd00072; GYF; 1.
DR CDD; cd15568; PHD5_NSD; 1.
DR CDD; cd10567; SWIB-MDM2_like; 1.
DR Gene3D; 3.30.1490.40; -; 1.
DR Gene3D; 3.90.70.200; Plus-3 domain; 1.
DR Gene3D; 1.10.245.10; SWIB/MDM2 domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR003169; GYF.
DR InterPro; IPR035445; GYF-like_dom_sf.
DR InterPro; IPR004343; Plus-3_dom.
DR InterPro; IPR036128; Plus3-like_sf.
DR InterPro; IPR019835; SWIB_domain.
DR InterPro; IPR036885; SWIB_MDM2_dom_sf.
DR InterPro; IPR003121; SWIB_MDM2_domain.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46695:SF4; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44; 1.
DR PANTHER; PTHR46695; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED; 1.
DR Pfam; PF02213; GYF; 1.
DR Pfam; PF03126; Plus-3; 1.
DR Pfam; PF02201; SWIB; 1.
DR Pfam; PF14608; zf-CCCH_2; 1.
DR SMART; SM00444; GYF; 1.
DR SMART; SM00249; PHD; 1.
DR SMART; SM00719; Plus3; 1.
DR SMART; SM00151; SWIB; 1.
DR SUPFAM; SSF90229; CCCH zinc finger; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF55277; GYF domain; 1.
DR SUPFAM; SSF159042; Plus3-like; 1.
DR SUPFAM; SSF47592; SWIB/MDM2 domain; 1.
DR PROSITE; PS50829; GYF; 1.
DR PROSITE; PS51360; PLUS3; 1.
DR PROSITE; PS51925; SWIB_MDM2; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 88..154
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 298..381
FT /note="DM2"
FT /evidence="ECO:0000259|PROSITE:PS51925"
FT DOMAIN 433..566
FT /note="Plus3"
FT /evidence="ECO:0000259|PROSITE:PS51360"
FT DOMAIN 755..809
FT /note="GYF"
FT /evidence="ECO:0000259|PROSITE:PS50829"
FT DOMAIN 1299..1324
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT ZN_FING 1299..1324
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 1..85
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 255..285
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 689..756
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 816..875
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 912..952
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1097..1120
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1137..1163
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1203..1296
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..15
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 718..739
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 847..868
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 938..952
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1217..1231
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1257..1289
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1324 AA; 146430 MW; EF4C0386A284C687 CRC64;
MENQQKHQLQ QVPGDESSVK GVVDRVRVDQ CGEIGASQAP SVPAPTVAGV VDEPAPVKRK
RGRPPRAHAK TVSQTRPPPP PRKDEKEEDV CFICFDGGDL VLCDRRNCPK AYHPACIKRD
EAFFRTAAKW NCGWHICGTC QKGSSYMCYT CTFSVCKRCI KDADYVIVRG NMGLCGTCIK
PIMLIENISQ GDNEAVKVDF DDKLSWEYLF KVYWLCLKEE LSLTVEELTR ANNPWKEVPY
TVPKVESRNI HTLSKACSSG NSDSDVVANG TKRKRTSDSP TVPSKLATKI PSNIPKKLPG
DTNWATKELL EFLSVMRNGD TSVLSQFDVQ GLLLDYIKKK NLRDPNQKSQ VVCDQMLVKL
FGRQRVGHFE MLKLLESHFL IQEKPKNGES SHAVRSQIEK DSAYDPVVRD RKRKMRRKTD
GGVQNENLDA YAAIDVHNIN LIYLRRKFLE TLLDDINKVH EKVVGTILRI KVSGSDQKLD
IYRLVQVVGT SKASASYQLG TKTTDVMLEI LNLDKREVIS IDQLSDQNVT EDECKRLRQS
IKCGLNKRLT VGDILKTAAT LQVMRVNEVL EADMLKLGHL RDRASEQGRK KEYPFFRLPY
YIYCTSLTLY LQMLSSFHLD VWFALGCERH FYTGCMERSK CVEKLGRLES PEERQRLLQE
VPEVHTDPSM DPSHPSAEDA VLGMRKPDKH IEVQSKSPKK KGDILNNLGN NPQKKYDAPV
LRSRKAMHAT NKEECSKVDN NSADIQQTGK DDEESEIWHY RDPAGKTQGP FSMVQLRKWK
SCGHFPPYLR IWKEHENQDE SVLLTDALAG RFDKATTLPS SSFHPQELKP SPHHSGRTGV
DANCLQKNLK PVSTSSTSSS SSIVNALPND PKEKQVATLV PCSGKVEDGI SVRPQPQVSC
PASMSVIPGH VITPDVRENS GTDQSSAVRP DGKTLEDGAN SGSVSINGSV HAPNLNQKIH
FRDFPSPTPK SSPEDLEAQA AETIQSLSSC VLVKGPSGVT WSTTATTTVD APTTTTTSSV
VVTGGQLPQV TQQSAVDLAA PSVKHIDLAA DHATATHTSN NTHVAHSSGW PAIVADPDEC
DESVSDLLAE VEAMEQNGLP SSPTSTFHYD DDDLTKGPEK DFFNPVARMS LTPETCRMNT
SQPSILDNVS TGKSSMGTES KDNTLFNAGP ELLLFAPPAP SSVSQDLTLT TTALRLGSET
TVKAGSVERL PKSLSGVSLE PSPSPRGNTE RSPRGNTERS PRGNGSHQRR SGGHSRDRQW
WNNGHNTSVN NNSHNNRQWP NSSRHGYDHG SGSYTAHPPK GLKICKFYES GNCKKGASCS
FWHP
//
