ID A0A086PAC0_SPHHM Unreviewed; 615 AA.
AC A0A086PAC0;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE SubName: Full=Type IV secretory protein VirD4 {ECO:0000313|EMBL:KFG90338.1};
GN ORFNames=BV98_001540 {ECO:0000313|EMBL:KFG90338.1};
OS Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC 16415 /
OS MH) (Sphingomonas herbicidovorans).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Sphingobium.
OX NCBI_TaxID=1219045 {ECO:0000313|EMBL:KFG90338.1, ECO:0000313|Proteomes:UP000024284};
RN [1] {ECO:0000313|EMBL:KFG90338.1, ECO:0000313|Proteomes:UP000024284}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NBRC 16415 {ECO:0000313|EMBL:KFG90338.1,
RC ECO:0000313|Proteomes:UP000024284};
RA Gan H.M., Gan H.Y., Savka M.A.;
RT "Draft genome sequences of Sphingobium herbicidovorans.";
RL Submitted (AUG-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KFG90338.1}.
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DR EMBL; JFZA02000012; KFG90338.1; -; Genomic_DNA.
DR RefSeq; WP_037464372.1; NZ_JFZA02000012.1.
DR AlphaFoldDB; A0A086PAC0; -.
DR STRING; 76947.GCA_002080435_01450; -.
DR PATRIC; fig|1219045.3.peg.1574; -.
DR eggNOG; COG3505; Bacteria.
DR OrthoDB; 102453at2; -.
DR Proteomes; UP000024284; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR CDD; cd01127; TrwB_TraG_TraD_VirD4; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR019476; T4SS_TraD_DNA-bd.
DR PANTHER; PTHR37937; CONJUGATIVE TRANSFER: DNA TRANSPORT; 1.
DR PANTHER; PTHR37937:SF1; CONJUGATIVE TRANSFER: DNA TRANSPORT; 1.
DR Pfam; PF10412; TrwB_AAD_bind; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000024284};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 113..131
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 172..563
FT /note="Type IV secretion system coupling protein TraD DNA-
FT binding"
FT /evidence="ECO:0000259|Pfam:PF10412"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 593..615
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..19
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 598..615
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 615 AA; 68663 MW; D5ECC3BAAC4D2437 CRC64;
MTRPDDRRNH ADALRKHHLS TQGARLKRQA LVMLASVALG GLTLPNMMLG RDAMLATGTY
YWARTKLWAV SGWEADTGID VHYPDHVEEG RSARQIIAHP YFRRRVDLVW SSFKWGSVLG
FGAWLVGLIA LRGALARRRE RLLADRWIGG TRVVNEKQLA RLTGKEADAP TLSIGKVRIP
ARLETRHMAM IGTTGSGKTT ALRQLLDGIE ARGEAALVYD TSGEFIAHYY DPARGDVILN
PFDARCAFWS PFAEIAHPAD ADRIAHQLIT ETGQHDSDVW LDTSRILVAN MIRALWQENR
RTLPDLLHAL KNRPKDDLKE WLATSSSART FADDADRATG SVLFMLAKAA DLIQFLRAED
GKAKPFAFRS FIEALDRHPG ARPWIFVPRK EDYFEASKPL LACWLECAAS AVLGLRPSEE
RRIWFVLDEL ADLPRVDNLA RLLPEGRKFG AAVVLTFQAL GQMQHRYGPQ IAESMLGCCN
TKLFLQTIDS DTRQWASQTI GDCEMEIRTK TDMLGDGDEG HRINLGRMRE VRPAVMESQL
RLARHEGYLL LPDGLPVARI RLTADHIARR GDPHQLGFIA ADPATMLWGQ ALRAVPPSPE
PSSSPSPKPD SQGPV
//
