ID   A0A087H0M0_ARAAL        Unreviewed;       807 AA.
AC   A0A087H0M0;
DT   29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT   29-OCT-2014, sequence version 1.
DT   27-MAR-2024, entry version 40.
DE   RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN   OrderedLocusNames=AALP_Aa4g022300 {ECO:0000313|EMBL:KFK35672.1};
OS   Arabis alpina (Alpine rock-cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis.
OX   NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK35672.1, ECO:0000313|Proteomes:UP000029120};
RN   [1] {ECO:0000313|Proteomes:UP000029120}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120};
RX   PubMed=27246759; DOI=10.1038/nplants.2014.23;
RA   Willing E.M., Rawat V., Mandakova T., Maumus F., James G.V.,
RA   Nordstroem K.J., Becker C., Warthmann N., Chica C., Szarzynska B.,
RA   Zytnicki M., Albani M.C., Kiefer C., Bergonzi S., Castaings L.,
RA   Mateos J.L., Berns M.C., Bujdoso N., Piofczyk T., de Lorenzo L.,
RA   Barrero-Sicilia C., Mateos I., Piednoel M., Hagmann J., Chen-Min-Tao R.,
RA   Iglesias-Fernandez R., Schuster S.C., Alonso-Blanco C., Roudier F.,
RA   Carbonero P., Paz-Ares J., Davis S.J., Pecinka A., Quesneville H.,
RA   Colot V., Lysak M.A., Weigel D., Coupland G., Schneeberger K.;
RT   "Genome expansion of Arabis alpina linked with retrotransposition and
RT   reduced symmetric DNA methylation.";
RL   Nat. Plants 1:14023-14023(2015).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC       {ECO:0000256|ARBA:ARBA00006643}.
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DR   EMBL; CM002872; KFK35672.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A087H0M0; -.
DR   EnsemblPlants; KFK35672; KFK35672; AALP_AA4G022300.
DR   Gramene; KFK35672; KFK35672; AALP_AA4G022300.
DR   eggNOG; KOG4197; Eukaryota.
DR   OMA; HACANLG; -.
DR   OrthoDB; 1200573at2759; -.
DR   Proteomes; UP000029120; Chromosome 4.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR045215; PPR_prot_At1g15510.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 6.
DR   PANTHER; PTHR24015:SF1832; OS03G0241800 PROTEIN; 1.
DR   PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 6.
DR   Pfam; PF13041; PPR_2; 3.
DR   SUPFAM; SSF48452; TPR-like; 1.
DR   PROSITE; PS51375; PPR; 5.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000029120};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          97..131
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          198..232
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          299..333
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          400..434
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          501..535
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          716..807
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   807 AA;  90611 MW;  F429DE882E4138EE CRC64;
     MLHVSAVPQF PNSTLTSHHR HVLTQRNHIP ANVYEHPAAL LLERCSSLKD LRQILPLVFK
     NGLYHEQLFQ TKFVSLFCRH GSVDEAARVF ELSDDKLDVL YHTMLKGYAK VSDLDKAVRF
     FVRMRYDDVE VVVYNFTYLL KVCGDEADLR MGKEIHGLLV KSGFSLDLFA MTGLENMYAK
     CRQVHEARKV FDRMSERDLV SWNTMVSGYS QNGLARLALD MVARMCEENL KPSFITIVSV
     LPAVSALGLI SIGKEIHGYV LRAGFDSLVN ICTALVDMYA KCGYLNVARQ IFDGMLERNV
     VSWNSMIDAY VQNESPKEAM VIFEKMLEEG VKPTDVSVMG ALHGCADLGD LERGRFIHEL
     SVKLDLDRNV SVVNSLISMY CKCKEVDTAA SVFGKLQTRT VVSWNAMILG FAQNGRPIEA
     LNYFSEMRAW NAKPDTFTYV SVITALAELS ITHQAKWIHG VVMRNCLNKN VFVATALVDM
     YAKCGAIMTA RKIFDMMSER HVTTWNAMID GYGTHGLGKS ALELFEEMRK GIIKPNGVTF
     LSIISACSHS GLVEEGLKGF DMMKEYYCIE PSMDHYGAMV DLLGRAGQLN EAWDFIIEMP
     VKPAVNVYGA MLGACQIHKN VEFAEKAAER LFELNPEDGG YHVLLANIYR AASMWEKVGQ
     VRVSMLRQGL RKTPGCSMVE IKNEVHSFFS GSTAHPDSKK IYAFLEKLMG KIKEAGYVPD
     MNLILGVEDD VKEQLLSSHS EKLAISFGLL NTTAGTTIHV RKNLRVCADC HNATKYISLV
     TGREIIVRDM QRFHHFKNGA CSCGDYW
//