ID   A0A087HFG4_ARAAL        Unreviewed;       583 AA.
AC   A0A087HFG4;
DT   29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT   29-OCT-2014, sequence version 1.
DT   27-MAR-2024, entry version 29.
DE   RecName: Full=Reverse transcriptase domain-containing protein {ECO:0000259|PROSITE:PS50878};
GN   OrderedLocusNames=AALP_Aa2g052000 {ECO:0000313|EMBL:KFK40866.1};
OS   Arabis alpina (Alpine rock-cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis.
OX   NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK40866.1, ECO:0000313|Proteomes:UP000029120};
RN   [1] {ECO:0000313|Proteomes:UP000029120}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120};
RX   PubMed=27246759; DOI=10.1038/nplants.2014.23;
RA   Willing E.M., Rawat V., Mandakova T., Maumus F., James G.V.,
RA   Nordstroem K.J., Becker C., Warthmann N., Chica C., Szarzynska B.,
RA   Zytnicki M., Albani M.C., Kiefer C., Bergonzi S., Castaings L.,
RA   Mateos J.L., Berns M.C., Bujdoso N., Piofczyk T., de Lorenzo L.,
RA   Barrero-Sicilia C., Mateos I., Piednoel M., Hagmann J., Chen-Min-Tao R.,
RA   Iglesias-Fernandez R., Schuster S.C., Alonso-Blanco C., Roudier F.,
RA   Carbonero P., Paz-Ares J., Davis S.J., Pecinka A., Quesneville H.,
RA   Colot V., Lysak M.A., Weigel D., Coupland G., Schneeberger K.;
RT   "Genome expansion of Arabis alpina linked with retrotransposition and
RT   reduced symmetric DNA methylation.";
RL   Nat. Plants 1:14023-14023(2015).
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DR   EMBL; CM002870; KFK40866.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A087HFG4; -.
DR   EnsemblPlants; KFK40866; KFK40866; AALP_AA2G052000.
DR   Gramene; KFK40866; KFK40866; AALP_AA2G052000.
DR   OMA; GAQWFTK; -.
DR   Proteomes; UP000029120; Chromosome 2.
DR   CDD; cd00303; retropepsin_like; 1.
DR   CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 3.10.20.370; -; 1.
DR   Gene3D; 3.30.70.270; -; 2.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR000477; RT_dom.
DR   InterPro; IPR041577; RT_RNaseH_2.
DR   PANTHER; PTHR33064; POL PROTEIN; 1.
DR   PANTHER; PTHR33064:SF40; REVERSE TRANSCRIPTASE_RETROTRANSPOSON-DERIVED PROTEIN RNASE H-LIKE DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF17919; RT_RNaseH_2; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   PROSITE; PS50878; RT_POL; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000029120}.
FT   DOMAIN          225..404
FT                   /note="Reverse transcriptase"
FT                   /evidence="ECO:0000259|PROSITE:PS50878"
SQ   SEQUENCE   583 AA;  66145 MW;  7FE796F589D93453 CRC64;
     MAQRRAEGLC FRCDEKWHER HHCHRRELSV MMVQEEGPDK EWVEEDETDS DEEGVTVAEM
     ATLSLNSLVG ISSPRTMKLK AKMLGTEVVV MIDSGALTTL YRNHWEVELE MQGITVVTDF
     LPIELGGADV ILGIQWLKTL GEINVNWKLQ RAKFKVNGQK VTIQGDPELV CAPITLKALC
     KAIGDEGQGV IVEFGSLQVG QKTKDELSGQ PRRVLGEFPQ VATMLAAGIF QGSNSPYSSP
     ILLVKKKDGS WRFCVDYKAL NKATIPDSFP IPMIDHLLDE LHGAKVFSKL DLKAGYHQIL
     VKKEDVPKTA FRTHEGHYEF LEMPFGLSNA PATFQSLMNE VFKKHLRKFV LVFFDDILVY
     SQTIANHHDH LRTVLGVLEE HQLYANQKKC YFGCESVEYL GHVISAEGVS ADPEKISGME
     KWPVPRNVKA LRGFMGLTGY YWKFVQRYGE IARPLTPLLK KDKFSWGPEA NEAFLKLKKA
     MVTVPFLAMA DFIALFVVES NASGVGLGAV LMQHQRLVAY FSQALTERQM LKSIYERELM
     AIVFAIQKWR HYLLGRRFVV RTVQKSLKFL LEQREINVEY RDG
//