ID   A0A087HG32_ARAAL        Unreviewed;       634 AA.
AC   A0A087HG32;
DT   29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT   29-OCT-2014, sequence version 1.
DT   27-MAR-2024, entry version 31.
DE   RecName: Full=RNase H type-1 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   OrderedLocusNames=AALP_Aa2g084100 {ECO:0000313|EMBL:KFK41084.1};
OS   Arabis alpina (Alpine rock-cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis.
OX   NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK41084.1, ECO:0000313|Proteomes:UP000029120};
RN   [1] {ECO:0000313|Proteomes:UP000029120}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120};
RX   PubMed=27246759; DOI=10.1038/nplants.2014.23;
RA   Willing E.M., Rawat V., Mandakova T., Maumus F., James G.V.,
RA   Nordstroem K.J., Becker C., Warthmann N., Chica C., Szarzynska B.,
RA   Zytnicki M., Albani M.C., Kiefer C., Bergonzi S., Castaings L.,
RA   Mateos J.L., Berns M.C., Bujdoso N., Piofczyk T., de Lorenzo L.,
RA   Barrero-Sicilia C., Mateos I., Piednoel M., Hagmann J., Chen-Min-Tao R.,
RA   Iglesias-Fernandez R., Schuster S.C., Alonso-Blanco C., Roudier F.,
RA   Carbonero P., Paz-Ares J., Davis S.J., Pecinka A., Quesneville H.,
RA   Colot V., Lysak M.A., Weigel D., Coupland G., Schneeberger K.;
RT   "Genome expansion of Arabis alpina linked with retrotransposition and
RT   reduced symmetric DNA methylation.";
RL   Nat. Plants 1:14023-14023(2015).
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DR   EMBL; CM002870; KFK41084.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A087HG32; -.
DR   EnsemblPlants; KFK41084; KFK41084; AALP_AA2G084100.
DR   Gramene; KFK41084; KFK41084; AALP_AA2G084100.
DR   Proteomes; UP000029120; Chromosome 2.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR   CDD; cd09279; RNase_HI_like; 1.
DR   Gene3D; 3.10.20.370; -; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR002156; RNaseH_domain.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR041577; RT_RNaseH_2.
DR   PANTHER; PTHR46387:SF8; OS08G0481175 PROTEIN; 1.
DR   PANTHER; PTHR46387; POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN; 1.
DR   Pfam; PF17919; RT_RNaseH_2; 1.
DR   Pfam; PF13456; RVT_3; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000029120}.
FT   DOMAIN          257..346
FT                   /note="Reverse transcriptase/retrotransposon-derived
FT                   protein RNase H-like"
FT                   /evidence="ECO:0000259|Pfam:PF17919"
FT   DOMAIN          424..490
FT                   /note="RNase H type-1"
FT                   /evidence="ECO:0000259|Pfam:PF13456"
FT   REGION          56..164
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          547..573
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        56..78
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        98..136
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        137..164
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   634 AA;  70907 MW;  636A08CD186C2AA7 CRC64;
     MSRRNNQEKE PLVEATAIKA PAQGDITEVK KMLETFLTKQ NKQAKIIEAT SKELKALSRR
     KRERPDTARL RARVDPQRLD FSAPRTTRGN PEDLPPPPPP RRETDKSPER IMDISDEEEP
     APTKRTRAEG AEGSRQEPRA SDTQSASGSS KTEIVKDTSE YTNYSSEEWY KKEQERRAFK
     RSYVAELAAV KAQMDRVTSD LKRTQSQIHH GTGKAPAIAQ QEMSLNTPTT IQDALHRAAD
     FARTEEEVQA TKGGKTKQLK EYLATPPILA KPVTGEPLFL YIDVSETPVS AVLAREERGE
     QKPIFYVSKT LIDAETRYPQ LEKLALSVVM ASRKLRPYFQ SHTIIILSTF PLRSVLHSPS
     QSGGLAKWVV ELSEYDIEYK GRTCNKSQVL VDFLIELPED QTTKEVRPEI WELHVEGSSS
     KNGSGIGIRL ASPTCEILEQ SFRLGFRASN NEAEYEAIIA RIRLAQGLNI KHVHALCDSQ
     LLASQFSGEY AKAMAETRVK DVTMTEAKAD TELTPLTMTP TTDADVIRVE VIEADVTDAD
     VVRTEVPDDL GQPEDLSTQN LPLEPKDKDT TIPMDTNEEP EYGCDKSWID QFALISLTES
     SLTASGQPAR DKRPVKSWRK YTAGLVAITQ EAKP
//