ID A0A091MGT8_9PASS Unreviewed; 1375 AA.
AC A0A091MGT8;
DT 26-NOV-2014, integrated into UniProtKB/TrEMBL.
DT 26-NOV-2014, sequence version 1.
DT 27-MAR-2024, entry version 28.
DE RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
DE Flags: Fragment;
GN ORFNames=N310_01109 {ECO:0000313|EMBL:KFP72528.1};
OS Acanthisitta chloris (rifleman).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Passeriformes; Acanthisittidae;
OC Acanthisitta.
OX NCBI_TaxID=57068 {ECO:0000313|EMBL:KFP72528.1, ECO:0000313|Proteomes:UP000053537};
RN [1] {ECO:0000313|EMBL:KFP72528.1, ECO:0000313|Proteomes:UP000053537}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BGI_N310 {ECO:0000313|EMBL:KFP72528.1};
RA Zhang G., Li C.;
RT "Genome evolution of avian class.";
RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000256|RuleBase:RU004279}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|RuleBase:RU004279};
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC {ECO:0000256|ARBA:ARBA00006460, ECO:0000256|RuleBase:RU004279}.
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DR EMBL; KK825626; KFP72528.1; -; Genomic_DNA.
DR Proteomes; UP000053537; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0031981; C:nuclear lumen; IEA:UniProt.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd02736; RNAP_III_Rpc1_C; 1.
DR CDD; cd02583; RNAP_III_RPC1_N; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 6.10.250.2940; -; 1.
DR Gene3D; 6.20.50.80; -; 1.
DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007080; RNA_pol_Rpb1_1.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR035698; RNAP_III_Rpc1_C.
DR InterPro; IPR035697; RNAP_III_RPC1_N.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF32; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1; 1.
DR Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000256|RuleBase:RU004279};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW ECO:0000256|RuleBase:RU004279}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000053537};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|RuleBase:RU004279};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279}.
FT DOMAIN 233..538
FT /note="RNA polymerase N-terminal"
FT /evidence="ECO:0000259|SMART:SM00663"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:KFP72528.1"
FT NON_TER 1375
FT /evidence="ECO:0000313|EMBL:KFP72528.1"
SQ SEQUENCE 1375 AA; 153775 MW; F8604BF75DAADAE8 CRC64;
SHICFGMKSP EEMRQQAHIQ VVSKNLYSQD NHHSPLQYGV LDHRMGTSEK DRPCETCGKS
LADCLGHYGY IDLELPCFHV GYFKAVIGIL QMICKTCCRI MLSVEEKKQF LDYLKRPGLT
YLQKRGLKKK VSEKCRKKNT CPYCGAFNGT VKKCGLLKII HEKYKTNKKV VDPVVSTFLQ
SFETAIEHNK EVEPLLGRAQ ENLNPLVVLN LFKRILAEDI PLLLMNPEAG KPSDLILTRL
LVPPLCIRPS VVSDLKSGTN EDDLTMKLTE IIFLNDVIKK HRISGAKTQM IMEDWDFLQL
QCALYINSEL SGIPLNMAPK KWTRGFVQRL KGKQGRFRGN LSGKRVDFSG RTVISPDPNL
RIDEVAVPIH VAKILTFPEK VNKANINFMR KLVCNGPDVH PGANFIQQRH TQMKRFLKYG
NREKMAQELK FGDIVERHLI DGDIVLFNRQ PSLHKLSIMA HIARVKPHRT FRFNECVCTP
YNADFDGDEM NLHLPQTEEA KAEALVLMGT KANLVTPRNG EPLIAAIQDF LTGAYLLTLK
DTFFDRAKAC QIIASILVGK DEKIKVRLPP PAILKPVTLW TGKQVFSLIL KPSDDCPVKA
NLRTKGKQYC GKGEDLCSND SYVTIQNSEL MSGSMDKGTL GSGSKNNIFY ILLRDWGQVE
AADAMSRLAR LAPVYLSNRG FSIGIGDVTP GQGLLKAKYE LLHAGYKKCD EYIEALNTGK
LQQQPGCTAE ETLEALILKE LSVIRDHAGS ACLRELDKSN SPLIMALCGS KGSFINISQM
IACVGQQAIS GSRVPDGFEN RSLPHFEKHS KLPAAKGFVA NSFYSGLTPT EFFFHTMAGR
EGLVDTAVKT AETGYMQRRL VKSLEDLCSQ YDLTVRSSTG DIIQFIYGGD GLDPAAMEGK
DEPLEFKRVL DNIRAVYPCR SEPALSKNEL VLTSESIMKK TEFLCCRDSF LQEIKKFIKG
VSEKIKKTRD KYGINDNGTT EPQVLYQLDR ITPTQLEKFL ETCRDKYMRA QMEPGSAVGA
LCAQSIGEPG TQMTLKTFHF AGVASMNITL GVPRIKEIIN ASKAISTPII TAQLDKDDDP
DFARLVKGRI EKTLLGEISE YIEEVFLPDD CFILVKLSLE RIRLLRLEVN AETVRYSICI
SKLRVKPGDV AVHGEAVVCV TPRENSKSSM YYVLQSLKEE LPKVVVQGIP EVSRAVIHVD
EQSGREKYKL LVEGDNLRAV MATHGVKGTK TSSNNTYEVE KTLGIEAART TIINEIQYTM
VNHGMSIDRR HVMLLSDLMT YKGEVLGITR FGLAKMKESV LMLASFEKTA DHLFDAAYFG
QKDSVCGVSE CIIMGIPMNI GTGLFKLLHK ADKESTPPRR PLIFDNNEFH IPIVT
//
