ID A0A0A0KN95_CUCSA Unreviewed; 1286 AA.
AC A0A0A0KN95;
DT 07-JAN-2015, integrated into UniProtKB/TrEMBL.
DT 07-JAN-2015, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE RecName: Full=Helicase-like transcription factor CHR28 {ECO:0008006|Google:ProtNLM};
GN ORFNames=Csa_6G517140 {ECO:0000313|EMBL:KGN49206.1};
OS Cucumis sativus (Cucumber).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis.
OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN49206.1, ECO:0000313|Proteomes:UP000029981};
RN [1] {ECO:0000313|EMBL:KGN49206.1, ECO:0000313|Proteomes:UP000029981}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 9930 {ECO:0000313|Proteomes:UP000029981};
RX PubMed=19881527; DOI=10.1038/ng.475;
RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X.,
RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G.,
RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., Jia Z.,
RA Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., Li B.,
RA Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., Zhao B.,
RA Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., Kim J.Y., Xu Y.,
RA Heller-Uszynska K., Miao H., Cheng Z., Zhang S., Wu J., Yang Y., Kang H.,
RA Li M., Liang H., Ren X., Shi Z., Wen M., Jian M., Yang H., Zhang G.,
RA Yang Z., Chen R., Liu S., Li J., Ma L., Liu H., Zhou Y., Zhao J., Fang X.,
RA Li G., Fang L., Li Y., Liu D., Zheng H., Zhang Y., Qin N., Li Z., Yang G.,
RA Yang S., Bolund L., Kristiansen K., Zheng H., Li S., Zhang X., Yang H.,
RA Wang J., Sun R., Zhang B., Jiang S., Wang J., Du Y., Li S.;
RT "The genome of the cucumber, Cucumis sativus L.";
RL Nat. Genet. 41:1275-1281(2009).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
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DR EMBL; CM002927; KGN49206.1; -; Genomic_DNA.
DR RefSeq; XP_004134959.1; XM_004134911.2.
DR STRING; 3659.A0A0A0KN95; -.
DR EnsemblPlants; KGN49206; KGN49206; Csa_6G517140.
DR GeneID; 101205947; -.
DR Gramene; KGN49206; KGN49206; Csa_6G517140.
DR KEGG; csv:101205947; -.
DR eggNOG; KOG1001; Eukaryota.
DR OMA; ICPIANC; -.
DR OrthoDB; 11932at2759; -.
DR Proteomes; UP000029981; Chromosome 6.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0008094; F:ATP-dependent activity, acting on DNA; IBA:GO_Central.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IBA:GO_Central.
DR CDD; cd18008; DEXDc_SHPRH-like; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 3.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR018957; Znf_C3HC4_RING-type.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR45626:SF16; SNF2 DOMAIN-CONTAINING PROTEIN _ HELICASE DOMAIN-CONTAINING PROTEIN _ ZINC FINGER PROTEIN-LIKE PROTEIN; 1.
DR PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF00097; zf-C3HC4; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000029981};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT TRANSMEM 36..54
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 544..820
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 974..1010
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 1118..1281
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 422..443
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 597..621
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 703..748
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 703..718
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1286 AA; 143142 MW; CD5EAF1D7E858829 CRC64;
MVISDDLINQ SPLLSIAGEV LGFQTFLIRF CFQTSLFAGL CVFSGFSLMI ILMADEASNF
PLQYADDDFD EDMSMEYEKI LHLLSEDLDP LQIKTEDLSP NNASTGQPAF DSSNQENFQL
QNDISHGFMD VTLKNHDSLD GKGTETLRSS ENNSCASVEL PSFDAEHSSK EVFPTESTVN
PSFDFVTDVT NSYSTMPYWM STVEQPFLVS SQYLFPGDYD SPLVSGNGDM TVNMMHDVEF
PSNSLCSSTT MDLYAQGATD HKSVSRESVS KDLILDRYSN VKRWDQNCES GNFISSFDGK
YPFHVDNLHI GQASMGIPMS TELNSSCKEL VSQMKNETMD SLVESCSGPW QSMMEENLFF
QSQRVFRSED MVCGTSGRLS NDGRYQNLYI TDQYSPNGHS SNLSNQPLVF IKDDRDHKLS
VRKSDIDHPQ VSPESTHSNL SDRAHVEDDP DICIIEDMSH PAPSNRSLMV GKSVASQSFS
IVSGSSTYMG IGSLRQKAKD IDILKVALQD LSQPKSETSP PDGALDVPLL RHQRIALSWM
VQKETSSVPC AGGILADDQG LGKTISTIAL ILKERAPIRA CPTVKHEELE TLNLDEDDDI
HPEHDGPKQE FSHQVSPSKD LTLSKNTSVQ AKGRPAAGTL VVCPTSVLRQ WADELHNKVS
SKANLSVLVY HGSSRTKDPC ELAKYDVVLT TYSIVSMEVP KQSVVDEEDD EKHNTEEQAI
LPSHLSSSKK RKNFSGSDKK HSKNKKGVDN EVFESVARPL AKVRWFRVVL DEAQSIKNHK
TQVARACWGL RAKRRWCLSG TPIQNAIDDL YSYFRFLKYD PYAAYKSFCS AIKFPINKNP
AKGYKKLQAI LRTIMLRRTK ATLLDGQPIV TLPPKHVELK KVDFTEEERD FYSKLEADSR
AQYEEYAAAG TVKQNYVNIL LMLLRLRQAC DHPLLVKPYD SKSLWRSSAD VAKKLPRDKQ
IFLLNCLEAS LAICGICNDP PEDGVVSECG HVFCKQCILE HLSSDDCQCP TGGCKVHLNA
SLLFSKSSLC NSNSDQLGED NSVVSSCSTV GDSMELSSSV MYESSKIKAA LEVLMSLAKP
KEYSRNTSPE LAVVGASEKS MDASSTELRL ESSECQDSTN KSSCELVKRG GEKAIVFSQW
TGMLDLLEAC LKNSSIQYRR LDGTMSVLAR DKAVKDFNNL PEVSVMIMSL KAASLGLNMI
VACHVLLLDL WWNPTTEDQA IDRAHRIGQT RPVTVLRLTV RDTVEDRILA LQQKKREMVS
SAFGEDEAGG RQTRLTVEDL NYLFMM
//
