ID A0A0A0L9H9_CUCSA Unreviewed; 1944 AA.
AC A0A0A0L9H9;
DT 07-JAN-2015, integrated into UniProtKB/TrEMBL.
DT 07-JAN-2015, sequence version 1.
DT 27-MAR-2024, entry version 33.
DE RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS51805};
GN ORFNames=Csa_3G236020 {ECO:0000313|EMBL:KGN57634.1};
OS Cucumis sativus (Cucumber).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis.
OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN57634.1, ECO:0000313|Proteomes:UP000029981};
RN [1] {ECO:0000313|EMBL:KGN57634.1, ECO:0000313|Proteomes:UP000029981}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 9930 {ECO:0000313|Proteomes:UP000029981};
RX PubMed=19881527; DOI=10.1038/ng.475;
RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X.,
RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G.,
RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., Jia Z.,
RA Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., Li B.,
RA Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., Zhao B.,
RA Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., Kim J.Y., Xu Y.,
RA Heller-Uszynska K., Miao H., Cheng Z., Zhang S., Wu J., Yang Y., Kang H.,
RA Li M., Liang H., Ren X., Shi Z., Wen M., Jian M., Yang H., Zhang G.,
RA Yang Z., Chen R., Liu S., Li J., Ma L., Liu H., Zhou Y., Zhao J., Fang X.,
RA Li G., Fang L., Li Y., Liu D., Zheng H., Zhang Y., Qin N., Li Z., Yang G.,
RA Yang S., Bolund L., Kristiansen K., Zheng H., Li S., Zhang X., Yang H.,
RA Wang J., Sun R., Zhang B., Jiang S., Wang J., Du Y., Li S.;
RT "The genome of the cucumber, Cucumis sativus L.";
RL Nat. Genet. 41:1275-1281(2009).
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DR EMBL; CM002924; KGN57634.1; -; Genomic_DNA.
DR STRING; 3659.A0A0A0L9H9; -.
DR EnsemblPlants; KGN57634; KGN57634; Csa_3G236020.
DR Gramene; KGN57634; KGN57634; Csa_3G236020.
DR eggNOG; KOG0017; Eukaryota.
DR eggNOG; KOG0732; Eukaryota.
DR OMA; KREDPEQ; -.
DR Proteomes; UP000029981; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0016887; F:ATP hydrolysis activity; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0042393; F:histone binding; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR041569; AAA_lid_3.
DR InterPro; IPR045199; ATAD2-like.
DR InterPro; IPR003959; ATPase_AAA_core.
DR InterPro; IPR003960; ATPase_AAA_CS.
DR InterPro; IPR034732; EPHD.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR23069; AAA DOMAIN-CONTAINING; 1.
DR PANTHER; PTHR23069:SF7; P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN; 1.
DR Pfam; PF00004; AAA; 1.
DR Pfam; PF17862; AAA_lid_3; 1.
DR Pfam; PF13771; zf-HC5HC2H; 1.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00674; AAA; 1.
DR PROSITE; PS51805; EPHD; 1.
PE 4: Predicted;
KW Bromodomain {ECO:0000256|ARBA:ARBA00023117};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000029981};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 497..617
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS51805"
FT REGION 254..329
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 479..507
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 262..314
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 315..329
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 485..503
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1944 AA; 216130 MW; F567713A339EF7B4 CRC64;
MLHICFLGLC NWTNYRILQS LRACRLIISL GPRWCFQFLF LIFVMRLSSG SVAPSLNQSG
NRSGPRLKKK HKRLDAICEK EYSRNHGDVN ENVSGLGTLE ADPGLRRSSR VRRAPVLLDA
SPIPRKKRRI VQGNGTLGVR TSANTLPLFS DDLKDETEGN WRSRLRSSSR NLGIRVDKGA
RASRKRKLFD EIVDVKVRNG GMRIDLDEEK GRMEFGESLV GRSNRTRRRF GVINDPIKIE
EEVKSPRIKD DCCKKDMLVI DIDDEEEGEG EGEGEEEEEE EEEEEEEEEE EEEEEEEEEE
EEEEEEEEGE EEVEGKEVVT AKDERGDGVL PLENEMDEEN VKVVDDVTPQ VVEKLDKETS
SSLHVDEACR ADHNEELANA VENANNGEIR LEESKQLNEG VNETQDVAAA VVSTNEVVGG
RSCNEKAVDM GKFTEKSREH GDDLNLKKFT DSSRGMLGKA RIKEGRRCGL CGGGIDGKPP
KKTAQDSGES GNEACSGSSA SEEPNYDKWD GFGDEPGWLG RLLGPINDRY GIAGIWVHQH
CAVWSPEVYF AGLGCLKNVR AALCRGRALK CTRCGRPGAT IGCRVDRCPR TYHLPCARAN
GCIFDHRKFL IACTDHRHIF QPHGNQYLAR IKRLKAKKMK LEIKKQSNDA WRRDIEAEEK
WLENCGEDEE FLKRESKRLH RDLVRIAPVY IGGSNSEGEN LFHGWESVAG LQGVIQCMKE
VVFLPLLYPE LFDRFGITPP RGVLLHGYPG TGKTHVVRAL IGSCARGDKR IAYFARKGAD
CLGKYVGDAE RQLRLLFQVA EKCQPSIIFF DEIDGLAPCR TRQQDQTHNS VVSTLLALLD
GLKSRGSVVV IGATNRPEAV DPALRRPGRF DREIYFPLPS VEDRAAILSL HTQKWPKPID
GPLLQWIARR TAGFAGADLQ ALCTQAAMSA LKRNFPLKEV LSASGEQVSR VNRPPLPSIL
VEERDWLEAL LYSPPPCSRR EAGMAANDVP SSPLPFHLIP CLLQPLSTLL VSLYLDERIT
LPTNLLKAAT LIKSVIVSAL DGKKIVTSCW WSHVHDFVQD ADIANEIEIK LQGSGVLVED
STFGSSGVLN VDTSNESSKF ENLGHCGGRP STMVEHSSFT LGNKSGFRIL IAGNPRSGPR
HLASCLIHCY IQHVEVRKVD IATISQEGHG DLVQGISQIL LNCSSMGSCL VFMPRIDLWA
IETQSQTSEE CGLYLNEDQY LEDGTIVNDD DQLGERENRC YSDQSKSTER TGLQDECLSS
ASYAWSSFVE QVESLSTPLM ILATSEVPFL LLPQEIRQFF RNDLSMCRPT TSEHSVPRFS
VQIDGVFDHD MVINQSAAEL SRDIVKLLVH LIHQKSHTRT LTCTKYQIPV IQDENNAENQ
QIDKETASEH NGEMKSPDVS SLRIAPLPGS RTMKVKSNLI SVISTFGHQI LRYPHFAELC
WVTSKLKEGP YADVSGPWKG WPFNSCIIRP MSTLEKGTSS SSLSNGKSKE ISGLVRGLIA
VGLSAIRGAY TSLRKVSLDV RLVLELLVEQ INAKINSGKE RYQYFRLLSQ VAYLEDVVNS
WAFTLQSLEH DSRTIETSKN LTSGGSEIHC EKNEPIISNK GSLANEIPEV SCQEPVEEEI
VRIDSLVDGN LNHSSSKDTT IVSEEHGERN FGIGNLVSDE TYNNAAAVDD QLIDNIPLKH
GEATILQPDS LDNERNDTSV KTPLDFGTES IVDLDHHHQN SSVLCSDEIP SGTKPCSTSN
GGCSALENGC KRDNSQLDTN DLEVNVHSSQ SRSGHSTNSA LICSVQCCTG CLNVLYNMSK
NILRNELESD QNDWTIEDVH DVVVALSVDL LAAVRRAFLD EKNGTLFDDR QMGGNGRFKS
LDSRTCDCKS SKDMVFKGVE CICHLSEKVS PSHSEMGIDP NFIFRDGVLV SVDPEKNVLF
HCKVETLCLC SLTELIVMAK KPLN
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