ID A0A0A0LJK2_CUCSA Unreviewed; 1235 AA.
AC A0A0A0LJK2;
DT 07-JAN-2015, integrated into UniProtKB/TrEMBL.
DT 07-JAN-2015, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE RecName: Full=Lysine-specific demethylase JMJ16 {ECO:0008006|Google:ProtNLM};
GN ORFNames=Csa_2G074790 {ECO:0000313|EMBL:KGN61269.1};
OS Cucumis sativus (Cucumber).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis.
OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN61269.1, ECO:0000313|Proteomes:UP000029981};
RN [1] {ECO:0000313|EMBL:KGN61269.1, ECO:0000313|Proteomes:UP000029981}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 9930 {ECO:0000313|Proteomes:UP000029981};
RX PubMed=19881527; DOI=10.1038/ng.475;
RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X.,
RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G.,
RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., Jia Z.,
RA Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., Li B.,
RA Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., Zhao B.,
RA Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., Kim J.Y., Xu Y.,
RA Heller-Uszynska K., Miao H., Cheng Z., Zhang S., Wu J., Yang Y., Kang H.,
RA Li M., Liang H., Ren X., Shi Z., Wen M., Jian M., Yang H., Zhang G.,
RA Yang Z., Chen R., Liu S., Li J., Ma L., Liu H., Zhou Y., Zhao J., Fang X.,
RA Li G., Fang L., Li Y., Liu D., Zheng H., Zhang Y., Qin N., Li Z., Yang G.,
RA Yang S., Bolund L., Kristiansen K., Zheng H., Li S., Zhang X., Yang H.,
RA Wang J., Sun R., Zhang B., Jiang S., Wang J., Du Y., Li S.;
RT "The genome of the cucumber, Cucumis sativus L.";
RL Nat. Genet. 41:1275-1281(2009).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM002923; KGN61269.1; -; Genomic_DNA.
DR RefSeq; XP_004152824.1; XM_004152776.2.
DR RefSeq; XP_011648999.1; XM_011650697.1.
DR RefSeq; XP_011649000.1; XM_011650698.1.
DR RefSeq; XP_011649001.1; XM_011650699.1.
DR RefSeq; XP_011649002.1; XM_011650700.1.
DR AlphaFoldDB; A0A0A0LJK2; -.
DR STRING; 3659.A0A0A0LJK2; -.
DR EnsemblPlants; KGN61269; KGN61269; Csa_2G074790.
DR GeneID; 101208186; -.
DR Gramene; KGN61269; KGN61269; Csa_2G074790.
DR KEGG; csv:101208186; -.
DR eggNOG; KOG1246; Eukaryota.
DR OMA; NSSHGIK; -.
DR OrthoDB; 1205686at2759; -.
DR Proteomes; UP000029981; Chromosome 2.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0034647; F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity; IBA:GO_Central.
DR GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProt.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR GO; GO:0022414; P:reproductive process; IEA:UniProt.
DR GO; GO:0048731; P:system development; IEA:UniProt.
DR Gene3D; 3.30.160.360; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003889; FYrich_C.
DR InterPro; IPR003888; FYrich_N.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR003349; JmjN.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR PANTHER; PTHR10694:SF113; PROTEIN JUMONJI; 1.
DR Pfam; PF05965; FYRC; 1.
DR Pfam; PF05964; FYRN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02375; JmjN; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00542; FYRC; 1.
DR SMART; SM00541; FYRN; 1.
DR SMART; SM00558; JmjC; 1.
DR SMART; SM00545; JmjN; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51543; FYRC; 1.
DR PROSITE; PS51542; FYRN; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51183; JMJN; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000029981};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 146..187
FT /note="JmjN"
FT /evidence="ECO:0000259|PROSITE:PS51183"
FT DOMAIN 360..526
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
SQ SEQUENCE 1235 AA; 138625 MW; C904F95E4D907B5D CRC64;
MGTELIRVCV EDDSDDFPSV PPGFESYISF SLGKVHNLEK QDIHAPPVSL PTVSEPQPAK
VGSEVEVPKV AKVTRSLRRK PCINYKQYDY CSDDEINSTN CLDQNSSSRP SLSKGVIRGC
PQCNNCQKVV ARWRPEESCR PNLENAPVFY PTEEEFGDTL TYIASIRAKA EPYGICRIVP
PSSWKPPCPL KQKHIWEGSK FVTRVQRIDK LQNRESIRKN SRICGQMRRK RRRCNRKGVD
VTTLNGKIAD AGSVEAERFG FDPGPDFTLA MFQKYADDFK SQYFSKPLID TAKGCNPSML
QDNENWKPSL EAIEGEYWRM VEKPTEEIEV LYGADLETGE FGSGFPKISC QEGSTLDEEK
YVKSGWNLNN FPKLPGSVLS YESSNISGVL VPWLYIGMCF SSFCWHVEDH HLYSLNYMHW
GDPKVWYGVP GNGAGKLEEA MRKHLPNLFQ EQPDLLHKLV TQLSPSILKS EGVPVYRCIQ
NPGEFVLTFP RAYHSGFNSG FNCAEAVNVA PVDWLPHGQI AVELYREQGR RTTISHDKLL
LGAAREAVRA HWELNLLKKN TLDNLRWNSV CGKDGILARA FKTRVEMERA RRNLPCSSSQ
AMKMESNFDA SNERECSSCL FDLHLSAVGC RCSPDKYVCL NHAKQLCSCA WEERIFLFRY
DISELNILLE ALEGKLSAVY RWARQDLGLA LSTSRELSFQ SSTKSHGNPQ WKELLRQSSL
LPTLTALNSS HHAQKLSEVT TSFLEVKKEI STVNGSEKEI GQQNHKIEVK KESHDLVATN
SKHADSQSCK EDTNALNKIE VKSTTDKMCP ENVILLSDDE GDDHKKTISN GLAESSSVKQ
LGNSDRFTEI DSKASLCNYN ENAILHTPAT DATTMGDKEV NLLIEKRLNN CQSRIVPLYS
KKSQNSNLSV RNAANAIQNN TCSDSGLGHS NREFLESTDT DCQKPQTCGS GKLNEGTHGN
AGMSATSCVL DSSRTTANLS CNQANMDRFM RQKGPRMAKV VRRINCNVEP LEYGIVLSGK
SWSNSQAIFP KGFKSKVKFI NVLDPSTLCY YVSEILDAGR DGPLFMVVLE HCSSEVFVHV
SATRCWELVR ERVNQEIAKQ HKLGRTNLPP LQPPGSLDGL EMFGFTSPAI VQAIEAMDRN
RVCGEYWDSR PYSRPQVHSP QLSQSTEISR NMQTTERNGI DPRPAGVDIV LRGLLKKANL
EELSSLYTLL NDNRPTVDQG VLARLLNEEI QSHRR
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