ID A0A0B0NSE3_GOSAR Unreviewed; 1123 AA.
AC A0A0B0NSE3;
DT 04-MAR-2015, integrated into UniProtKB/TrEMBL.
DT 04-MAR-2015, sequence version 1.
DT 27-MAR-2024, entry version 52.
DE RecName: Full=Phytochrome {ECO:0000256|PIRNR:PIRNR000084};
GN ORFNames=F383_20736 {ECO:0000313|EMBL:KHG15745.1};
OS Gossypium arboreum (Tree cotton) (Gossypium nanking).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG15745.1, ECO:0000313|Proteomes:UP000032142};
RN [1] {ECO:0000313|Proteomes:UP000032142}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. AKA8401 {ECO:0000313|Proteomes:UP000032142};
RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A.,
RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J.,
RA Wilkins T.A.;
RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Regulatory photoreceptor which exists in two forms that are
CC reversibly interconvertible by light: the Pr form that absorbs
CC maximally in the red region of the spectrum and the Pfr form that
CC absorbs maximally in the far-red region.
CC {ECO:0000256|PIRNR:PIRNR000084}.
CC -!- PTM: Contains one covalently linked phytochromobilin chromophore.
CC {ECO:0000256|PIRSR:PIRSR000084-50}.
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235, ECO:0000256|PIRNR:PIRNR000084}.
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DR EMBL; KN404449; KHG15745.1; -; Genomic_DNA.
DR RefSeq; XP_017630550.1; XM_017775061.1.
DR RefSeq; XP_017630551.1; XM_017775062.1.
DR RefSeq; XP_017630552.1; XM_017775063.1.
DR AlphaFoldDB; A0A0B0NSE3; -.
DR GeneID; 108473484; -.
DR KEGG; gab:108473484; -.
DR OrthoDB; 1770905at2759; -.
DR Proteomes; UP000032142; Unassembled WGS sequence.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IEA:UniProt.
DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0042803; F:protein homodimerization activity; IEA:InterPro.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0009585; P:red, far-red light phototransduction; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd16932; HATPase_Phy-like; 1.
DR CDD; cd00082; HisKA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 1.10.287.130; -; 1.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.565.10; Histidine kinase-like ATPase, C-terminal domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR003594; HATPase_C.
DR InterPro; IPR036890; HATPase_C_sf.
DR InterPro; IPR005467; His_kinase_dom.
DR InterPro; IPR003661; HisK_dim/P.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR044767; Phy_HATPase-like.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR012129; Phytochrome_A-E.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 2.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02518; HATPase_c; 1.
DR Pfam; PF00512; HisKA; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PIRSF; PIRSF000084; Phytochrome; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00387; HATPase_c; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55874; ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50109; HIS_KIN; 1.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991, ECO:0000256|PIRNR:PIRNR000084};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Receptor {ECO:0000256|ARBA:ARBA00023170, ECO:0000256|PIRNR:PIRNR000084};
KW Reference proteome {ECO:0000313|Proteomes:UP000032142};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|PIRNR:PIRNR000084}.
FT BINDING 324
FT /ligand="phytochromobilin"
FT /ligand_id="ChEBI:CHEBI:189064"
FT /note="covalent"
FT /evidence="ECO:0000256|PIRSR:PIRSR000084-50"
SQ SEQUENCE 1123 AA; 125472 MW; 79F297650670719E CRC64;
MSSRSTNKSN CSRSSSARSK QNARVIAQTT IDAKLHVDFE ESKRLFDYST SIDFNISSST
SNVPSSTVSA YLQKMQRGSL IQPFGCLIAV DEQNFTVLAY SENAPELLDL APHAVPNIEQ
QEALTYGSDV RTLFSSPGAT ALQKAANFGE VNLLNPILVH CKTSGKPFYA ILHRIEAALV
IDLEPVNPAE VPVTAAGALK SYKLAAKAIS RLQSLPSGNI SLLCDVLVKE VSDLTGYDRV
MVYKFHEDEH GEVIAESRRP DLEPYLGLHY PATDIPQASR FLFMKNKVRM ICDCSAQPVK
VIQDKGLAQP LSLCGSTLRS PHGCHAQYMA SMGSIASLVM SVTINENDDE MDSEQDKGRK
LWGLVVCHHT SPRFVPFPLR YACEFLIQVF GVQINKEVEL AAQMREKHIL QTQTVLCDML
LRDSPVGIVT KSPNVMDLVK CDGAALYYRQ KFWLLGVTPT KAQIRDIAEW LLEYHRSSTG
LSTDSLMEAG YPGASVLGEA VCGIAAVKIT SKDFLFWFRS HTAKEIKWGG AKHDPGGKDD
GRKMHPRSSF KAFLEVVKWR SLPWEDIEMD AIHSLQLILK GSLQDEVADD SKMIVNVPSI
DDRIQRVDEL RIVTNEMVRL IETAAVPIFA VDSSGNINGW NSKAAELTGL TIEQAIGMSL
FDLVEDDSVD VVKNMLSLAL EGIEERSIEI KLRTFGCQEN NGPIILVVNA CCSRDLKENV
VGICFVGQDL TSQKMVMNKY TRVQGDYVGI MRNPSALIPP IFMIDEVGRC LEWNDAMQKL
TGMKREEAID RMLLGEVFTV DKFGFRVKDH DTFTKLRILF NGITAGEDAD KLLFGFFDQE
GKFVEVLLSA NRRTDANGRI TGILCFLHVA SPELQYALQV QKISEQAAAS SLNKLAYIRQ
ELRKPLKGIV LMQGLMGATD LSSDQRQLLR TSVMCQEQMA KIVDDTDIES IEECYMEMDS
GEFNLGEALE AVLKQVMLMS QERQVQVIQD LPPEVSSMYL YGDNLRLQQV LSDFLTNALL
FTPVFEESSV SFRVIPRKER IGTKIHIVYL EFRITHPAPG IPEDLIREMF HYRQGVSREG
LGLYISQKLV KIMNGTVQYL REAERSSFII FLEFPLARQL GHH
//
