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Database: UniProt
Entry: A0A0B2A1P9_9MICO
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ID   A0A0B2A1P9_9MICO        Unreviewed;       811 AA.
AC   A0A0B2A1P9;
DT   04-MAR-2015, integrated into UniProtKB/TrEMBL.
DT   04-MAR-2015, sequence version 1.
DT   24-JAN-2024, entry version 34.
DE   RecName: Full=DNA ligase (ATP) {ECO:0000256|ARBA:ARBA00012727};
DE            EC=6.5.1.1 {ECO:0000256|ARBA:ARBA00012727};
DE   AltName: Full=NHEJ DNA polymerase {ECO:0000256|ARBA:ARBA00029943};
GN   ORFNames=LK09_11470 {ECO:0000313|EMBL:KHK97394.1};
OS   Microbacterium mangrovi.
OC   Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae;
OC   Microbacterium.
OX   NCBI_TaxID=1348253 {ECO:0000313|EMBL:KHK97394.1, ECO:0000313|Proteomes:UP000031030};
RN   [1] {ECO:0000313|EMBL:KHK97394.1, ECO:0000313|Proteomes:UP000031030}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=MUSC 115 {ECO:0000313|EMBL:KHK97394.1,
RC   ECO:0000313|Proteomes:UP000031030};
RA   Lee L.-H.;
RT   "Genome sequence of Microbacterium mangrovi MUSC 115(T).";
RL   Submitted (NOV-2014) to the EMBL/GenBank/DDBJ databases.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-
CC         (deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP +
CC         diphosphate.; EC=6.5.1.1; Evidence={ECO:0000256|ARBA:ARBA00034003};
CC   -!- COFACTOR:
CC       Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
CC         Evidence={ECO:0000256|ARBA:ARBA00001936};
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KHK97394.1}.
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DR   EMBL; JTDK01000010; KHK97394.1; -; Genomic_DNA.
DR   RefSeq; WP_039399368.1; NZ_JTDK01000010.1.
DR   AlphaFoldDB; A0A0B2A1P9; -.
DR   STRING; 1348253.LK09_11470; -.
DR   OrthoDB; 9802472at2; -.
DR   Proteomes; UP000031030; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR   GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd04863; MtLigD_Pol_like; 1.
DR   CDD; cd07971; OBF_DNA_ligase_LigD; 1.
DR   Gene3D; 3.30.1490.70; -; 1.
DR   Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR   Gene3D; 3.90.920.10; DNA primase, PRIM domain; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR016059; DNA_ligase_ATP-dep_CS.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR033649; MtLigD_Pol-like.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   NCBIfam; TIGR02777; LigD_PE_dom; 1.
DR   NCBIfam; TIGR02778; ligD_pol; 1.
DR   NCBIfam; TIGR02779; NHEJ_ligase_lig; 1.
DR   PANTHER; PTHR42705; BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD; 1.
DR   PANTHER; PTHR42705:SF2; BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD; 1.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   Pfam; PF21686; LigD_Prim-Pol; 1.
DR   SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR   PROSITE; PS00697; DNA_LIGASE_A1; 1.
DR   PROSITE; PS00333; DNA_LIGASE_A2; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   DNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00022932};
KW   Exonuclease {ECO:0000256|ARBA:ARBA00022839};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW   Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000313|EMBL:KHK97394.1};
KW   Manganese {ECO:0000256|ARBA:ARBA00023211};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Multifunctional enzyme {ECO:0000256|ARBA:ARBA00023268};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW   Reference proteome {ECO:0000313|Proteomes:UP000031030};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          598..721
FT                   /note="ATP-dependent DNA ligase family profile"
FT                   /evidence="ECO:0000259|PROSITE:PS50160"
FT   REGION          461..486
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   811 AA;  88571 MW;  1A4C08170CE2ED8F CRC64;
     MADDEQLVRV AGRRLRLTNL DKVLYPETGT TKAEVIDYFS RIAPLMIPHV TGRPITRKRW
     PEGVQSTPFF AKDLEAGAPG WLRRMPIQHS GGAKDYPLAD DTAALVYLAQ TAALELHVPQ
     WRFGDDGMPA PPDRLVLDLD PGPGAGLVEC AAVARWARRI LTDMGLEPYP VTSGSKGLHL
     YAALEGALTS EQVSQVAKEL ARALESDHPE LVVSSMSKAL RDGKVLVDWS QNNGKKTTIA
     PYSLRGRERP FVAAPRTWDE LDDPGLRHLV IGDVLLRADE LGDPMAAIGF RAGARGGTTG
     PLSAYIAKRD ANRTPEPVPE NPLAHATPAG ERPRFVIQEH HATRLHWDFR LEHDGVFASW
     AVPRGVPPTP GRNNLAVQTE DHPLEYGSFE GTIPRGEYGA GTVTIWDDGR YDLEKWREDE
     IILTAEGRPG GPLGRARLAL IRTDGDGEKS TWLLHRMKTD AAGLPQPDAA TPTPTEQADR
     RPPRDHETLS LAVPRAMLSV SATPGIARAA AQRWGAWTEI KWDGMRALGV WDGERLRLYA
     RSGADATARY PDIVRDVDLG PRPLVLDGEV VAMDASGRPS FTRLQQRMNL RSPDEIAREV
     PRTPVQYVLF DALPVGDEHD AVLPLRERRR LLEDLSARLP AQIIVPPVFD DVDAALETSG
     RLGLEGVVVK DPASSYQPGV RSPSWLKVKH VRTQEVVIGG MRPGRGGRAS MIGSLLVGVP
     TPEGLHYCGR VGSGLSERAL ASLLDLLAPL VVNTDPFADT PAADAADAIW VQPSVVAEVE
     FAEWSPNGTL RQARWRGLRP DKSAADVVRE D
//
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