ID A0A0B2SJ42_GLYSO Unreviewed; 2046 AA.
AC A0A0B2SJ42;
DT 04-MAR-2015, integrated into UniProtKB/TrEMBL.
DT 04-MAR-2015, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE SubName: Full=Lysine-specific demethylase 3A {ECO:0000313|EMBL:KHN44317.1};
DE EC=1.14.11.- {ECO:0000313|EMBL:KHN44317.1};
DE SubName: Full=Lysine-specific demethylase JMJ25 isoform A {ECO:0000313|EMBL:RZB69144.1};
GN ORFNames=D0Y65_038774 {ECO:0000313|EMBL:RZB69144.1}, glysoja_047131
GN {ECO:0000313|EMBL:KHN44317.1};
OS Glycine soja (Wild soybean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3848 {ECO:0000313|EMBL:KHN44317.1};
RN [1] {ECO:0000313|EMBL:KHN44317.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=Root {ECO:0000313|EMBL:KHN44317.1};
RA Lam H.-M., Qi X., Li M.-W., Liu X., Xie M., Ni M., Xu X.;
RT "Identification of a novel salt tolerance gene in wild soybean by whole-
RT genome sequencing.";
RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:RZB69144.1, ECO:0000313|Proteomes:UP000289340}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000289340};
RC TISSUE=Hypocotyl of etiolated seedlings {ECO:0000313|EMBL:RZB69144.1};
RA Xie M., Chung C.Y.L., Li M.-W., Wong F.-L., Chan T.-F., Lam H.-M.;
RT "A high-quality reference genome of wild soybean provides a powerful tool
RT to mine soybean genomes.";
RL Submitted (SEP-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01002}.
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DR EMBL; KN643270; KHN44317.1; -; Genomic_DNA.
DR EMBL; QZWG01000014; RZB69144.1; -; Genomic_DNA.
DR OrthoDB; 3473445at2759; -.
DR Proteomes; UP000053555; Unassembled WGS sequence.
DR Proteomes; UP000289340; Chromosome 14.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0032454; F:histone H3K9 demethylase activity; IEA:InterPro.
DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW.
DR GO; GO:0032259; P:methylation; IEA:UniProtKB-KW.
DR Gene3D; 2.60.120.650; Cupin; 2.
DR InterPro; IPR017956; AT_hook_DNA-bd_motif.
DR InterPro; IPR045109; JHDM2-like.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR014977; WRC_dom.
DR InterPro; IPR018866; Znf-4CXXC_R1.
DR InterPro; IPR001841; Znf_RING.
DR PANTHER; PTHR12549:SF66; ENBP1 PROTEIN; 1.
DR PANTHER; PTHR12549; JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF10497; zf-4CXXC_R1; 1.
DR SMART; SM00384; AT_hook; 8.
DR SMART; SM00558; JmjC; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51667; WRC; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Methyltransferase {ECO:0000313|EMBL:KHN44317.1};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Oxidoreductase {ECO:0000313|EMBL:KHN44317.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000289340};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000313|EMBL:KHN44317.1};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT DOMAIN 7..53
FT /note="WRC"
FT /evidence="ECO:0000259|PROSITE:PS51667"
FT DOMAIN 1044..1090
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 1452..1992
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 43..78
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 331..365
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 514..542
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 733..764
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 777..880
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 909..932
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1554..1584
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 738..752
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 780..803
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 804..822
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 830..853
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 858..880
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 911..932
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 2046 AA; 226900 MW; 306CA29B087D7FD8 CRC64;
MDEPGDEEEF RRCTRSASGG WRCKERAMRG RSFCERHFLY QQQRNRSAKK KRASGGVGVP
QKRGMKQRKK PEGDLENGVV GAGVVGADGD GADGDHTGGP HVVEEFAGLF GEGHDGGVNL
GLGCESFDLW GEVEGQHVHM GGFGGGCGKL GQVEGQVLGQ PWSNANAGGG VFDAVLGGHA
SGAGVGVCEN DFLDLSSGGL EADFDSLYDQ GFQALLCQGG GCEEDVGFIG SDWAIPNFAA
LGGSTGFQGL SGENAYQFRG EEVAGCVGNP GGYGKVEDDS FGGIDVPGSN SRHHGDNASD
SKMLVLGVEE GMERLLDGGL ASSEEAKGVA FRPVARRGRP KGSKNKDKQF HTTLNRQSVG
ENVKGGTNGI SSVTVSGSVF KAVDEGAVLG EIARPKKRGR QNGLNTVNNV TILESERSVF
SVEEDKAGDE GVGLGEIVKP KKLGRRKGSN RISNVTVLES ERSLFSGEED KAEDEVAGLG
EIVRPKKRDR PKGSNRMSII TVLKSERPLL SVEEGSADDE GAGLGEIVRP KKRGRPKGSR
NKKNILHVSN NVVVMFAGPK KLGRPEGSEG RKKSVVLVGN KVVGEIAGPN KCGKTKGSKN
KIKNVVEVGN EVAGAGEIAG PKKHGRPRGS TKIKKNALEV NNEVSGAGEI TGFKKRGRPK
GSTKKRYTVV YASSNEVACE VARQDLENKM LSNLCQKVSD ELVSINNKYG PAMSTRSNSR
SFVFEGQKFP GMSNDINLEG DGGSTSVWSS GLEKEKGRSP KPVKEIENSK ITWPIVKRGR
PKGSRNKKIK LIGQVRTKHG RPKGYKSKAE EAGNNFDKGG KKRGRPKGSH RKEKESAYHF
DSLIERHGLV AEKEGGTSAE SASKNDTGQE KKIYSCQRSS RITRQAIKQS QSRGLKEKTP
AAVTIADENE PNGVTDRSMT NARGQSLQKH KSTRFSKVLS RIMPQNDLQE ECITLLEDQV
HEVKKSHFLL ECSENPRNEN TKRTGLTCAT SNDQRRSSER LKALLIDGKN FQGVGREETV
YHGLESSALM CDNGKKKEAR TLRCHQCWQK SRSGIVICTE CKRKRYCYEC ITKWYPDKTR
EEIEVSCPFC LGNCNCRLCL KEEDISVLTG TGEADTDVKL QKLFYLLDKV LPLLQSIQLE
QISELKVEAR MQGSQLLEEE VVHSLIDDDD RVYCDNCNTS IVNFHRSCPN PNCQYDLCLT
CCMELRNELH CEEIPASGNE RTDDTPPVTA WRAELNGGIP CPPKARGGCG TTILSLRRLF
EANWVHKLIK NVEELTVKYQ PPNIDLSLGC SMCHSFEEDA VQNSVRKAAS RETSHGNFLY
CPDAIKMEDT EFEHFQRHWI RGEPVIVRNV FEKGSGLSWH PMVMWRAFRG AKKILKDEAA
TFKAIDCLDW CEVEINIFQF FKGYLEGRRY RNGWPEMLKL KDWPPSNSFE ECLPRHGAEF
IAMLPFSDYT HPKSGVLNLA TKLPAVLKPD LGPKTYIAYG SLEELSRGDS VTKLHCDISD
AVNILIHTAE VKTPPWQPRI IKKIQKKYEV EDMHELYGKD SKAIGSCRRK RQKCHVGITR
NPKTPEKADT SGRDSTLPGS QLKEKLNEQQ SRLLNMGESR SDKEACIQGL SESAKSKLSL
NVGEQEVLNL NSRLQDFDLN NHDSSCIILE KDSKLMHYKV NNVKQWCSSS GEGISLPEHM
QFKTCTNDDY EKGRISAMHL MKDKFCSIYD QSDTRSVFDD LNLPTPQARV NQEHQKNYIE
QSRFKSRCIH FEELPYYSGK NVSDLLFPQE QFSQHYFSVC GNGVDNTVLQ DVTDTGGDFP
LDESYGQDPD NDIGGYPNTS ESHLPCTSTE DTKFVNGLNS LDTPCSDINV EKIESVKNDT
SSNNFCQNDD HLETQYGSAV WDIFRRQDVP KLTEYLKKHH REFRHINNLP VNSVIHPIHD
QILYLNEKHK KQLKQEFGVE PWTFEQHLGD AVFVPAGCPH QVRNRKSCIK VALDFVSPEN
VQECIRLTEE FRLLPKGHRS KEDKLEIKKM ALYAADVAIT EATKLMRGND MSDEAKEVPQ
QHIFTK
//
