ID A0A0D2LXS8_GOSRA Unreviewed; 976 AA.
AC A0A0D2LXS8;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 38.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN ORFNames=B456_001G121000 {ECO:0000313|EMBL:KJB09042.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB09042.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB09042.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM001740; KJB09042.1; -; Genomic_DNA.
DR RefSeq; XP_012476600.1; XM_012621146.1.
DR AlphaFoldDB; A0A0D2LXS8; -.
DR STRING; 29730.A0A0D2LXS8; -.
DR EnsemblPlants; KJB09042; KJB09042; B456_001G121000.
DR GeneID; 105792529; -.
DR Gramene; KJB09042; KJB09042; B456_001G121000.
DR KEGG; gra:105792529; -.
DR eggNOG; KOG4197; Eukaryota.
DR OMA; PEKSSPC; -.
DR OrthoDB; 1204407at2759; -.
DR Proteomes; UP000032304; Chromosome 1.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 3.
DR PANTHER; PTHR24015:SF1672; OS06G0506100 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 8.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 5.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 90..124
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 198..232
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 478..512
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 679..713
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 714..749
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 884..976
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 976 AA; 109806 MW; 2C75F91A25E28068 CRC64;
MHSLLTCSSI ISSSPPFLLL QSHTPKLTHF PQLNHITPQN SQHLKLTHFL KPHANPKPPL
FYFNLHLQLY INAGFMQEAR DLFDSMPERT LISWTILMSG YAKHGPSTEA LALFKEMLST
GDNHKTRLRP DSYVYAVVLR SCGEMRELGF GKGVHGQVLK KGEAFLDGFL ENSLVNMYSS
CGQLEDAVLI FDGIEKPGLV AWSSMLSAYV KNGFEKEGLS VFLDMVSKGI KLDAFVFSMV
IKACSNLEEL NLGIQVHGLM VKKGFGKGSC LFLDNSLMDF YAKCKDLKGL RKVFDQLHEK
DLVSWNTLIM GYVHNFYYFE ALRNFRVLMH DICYCDDFTI TSILKAISSL HDMGYGRQVH
GYIVRTGLAS NSYVMCSLLD MYIECIEHES WEQWEKVPLK VYAGLERGEA NECIIIASML
KWCSLLSNLD AGKVFHSLAN KLAVDSDPYV ISALIDMYSK CGVPEAALRV FERVENPGTV
TWSALISGLS WNGWFVEALT CFNKMQLNGI EANEFTLTSV ILACVALGDL RKGRELHCKI
LKTCYESNVS IVNMLINLYS ELSDHQQALK LCSLVSDAEI SWNLLIQASL KANDYEMIHK
LLGRIQSCFG YLEPISVCDI FRSCSSPVLL NMGMQAQAYM TKRGLLSHPT SGNGLIQMYS
GCGQIAEADL VFESMPEKSS PCWTSIISAK VEHGHPSEAL TLFNKMRRRN KLVDSSTLKS
ILKACSQMGR VDEARSLLMS MEVVYGVKPS EEHYSCVIEA FTRAGMLEEL ENFINEVVVD
KNDTKIWNTV LSSARVIGNM DMAKFALEKL LEIDPNDCFA NLMLGKVLVM FGKWKDASKM
KTLGPNSSCI EVQNKIFEFV SDQKPSEEVL HKLGEIEREM EELGYVEDRN HLLHDAEEEE
YDGAGLGHTE MKAIAFGLLS LPHRTPVRVI KSVRMCGTCH HACKFMSTFV DRELVVKDNC
TFHHFRDGKC SCQDSW
//
