ID A0A0D2RAF0_GOSRA Unreviewed; 1470 AA.
AC A0A0D2RAF0;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN ORFNames=B456_002G216000 {ECO:0000313|EMBL:KJB16165.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB16165.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB16165.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00001556};
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DR EMBL; CM001741; KJB16165.1; -; Genomic_DNA.
DR RefSeq; XP_012467824.1; XM_012612370.1.
DR STRING; 29730.A0A0D2RAF0; -.
DR EnsemblPlants; KJB16165; KJB16165; B456_002G216000.
DR GeneID; 105786094; -.
DR Gramene; KJB16165; KJB16165; B456_002G216000.
DR KEGG; gra:105786094; -.
DR eggNOG; KOG0920; Eukaryota.
DR OrthoDB; 53793at2759; -.
DR Proteomes; UP000032304; Chromosome 2.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR CDD; cd17917; DEXHc_RHA-like; 1.
DR CDD; cd00048; DSRM_SF; 1.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1080; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR048333; HA2_WH.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF145; ATP-DEPENDENT RNA HELICASE DHX29; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF21010; HA2_C; 1.
DR Pfam; PF04408; HA2_N; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304}.
FT DOMAIN 638..814
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 914..1089
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..80
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 203..232
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 12..38
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 48..76
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 209..223
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1470 AA; 163858 MW; D58731BDCAFABA73 CRC64;
MAPKKKPQKQ SNRKATSASS SSSKANQATS SAPRLQISAE NENRLRRLLL NSGHSTQSQS
QSQSESDLNP PQDSLSKAQK AKKLKALYEK LSCEGFSNDQ IELALSSLKD GATFETALDW
LCLNLPRNEL PLKFSSGISL HSDGGGSISV ISVEREDWTP SVDASTRIKE NLHGLSVRTK
SSEDENSLNM CQPSQADWIR QYMEQQEEDE SKTWEDEASD EGSAEEVSGP RPYDVIAKEY
HAARLEATKA KEKKDKNGQE KAGSRIRKLK QELSALGLSD AVLASDFLHE RASASVSEGT
VTSSMPEEQP EMISLGDAEC NSAACVITSG VATGSVNDTE TSKELSTKSI PSLLPTQEKG
DAENMSEDLE IGDFFLEDSS INDVLASEVL KLRKQEKMKE LYSEKNLEKL DGIWKKGESK
KIPKAVLHQL CQRSGWEAPK FDKMPAKGKS FAYSVSVLRK ASGRGKSRKA GGLITLQLPN
EQEAFESAED SQNRVAAFAL CQLFPDLPTQ LIVTEPYSSL IFQWKGGESL TKIEDNEEDR
RAGFVDRLLR DEDSRSKAPG HDTNESALNE FQKACLEDNK TSSSSVADPV YERKSHAKEM
ESVYLRQEEE KRKHTQRYKE MLKTRAALPV AGLKNDILQL LKENNVLVVC GETGSGKTTQ
VPQFILDDMI ESGHGGHCSI ICTQPRRIAA ISVAERVADE RCEPSPGSNW SLVGYQVRLD
NARNEKTKLL FCTTGILLRK LAGDKNLTGV THIIVDEVHE RSLLGDFLLI VLKNLIEKQS
VSNTPKLKVI LMSATVDSDL FSRYFGLCPV ITAQGRTHPV TTCFLEDIYE RINYHLASDS
PASLRCETST RDMRGPVNNH RGKKNLVLSA WGDDSLLSEE YVNPHYDSSS YQSYSEQTQQ
NLKRLNEDVI DYDLLEDLVC HVDETCDKGA ILIFLPGVVE IHTLLDRLAA SYRFAGPSSD
WLLPLHSSIA ADEQKKVFLN PPDGIRKVII ATNIAETSIT IDDVVYVIDC GKHKENRYNP
QKKLSSMVED WISRANAKQR RGRAGRVKPG ICFCLYTRHR FEKLMRPYQV PEMLRMPLVE
LCLQIKLLSL GQIKPFLSKA LEPPKEEAMN SAISLLYEVG AVEGDEELTP LGHHLAKLPV
DVLIGKMLLY GGIFGCLSPI LSISACLSYK SPFLYPKDEK QNVERAKLAL LSEKLDESSD
LNDAERQSDH LLMMAAYRKW EKIFREKGVK AAQRFCKMYF LSSSVMSMIR DMRIQFGTLL
ADIGFINLPK NYKSGGKRKE NLDGWFSDYS QPFNIHSHHS AVVKAILCAG LYPNVAATEL
GITGVALSRL KLNPATKGHP VWYDGRREVH IHPSSINSSL KSFQHLFLVF LEKVETNKVF
LRDTTIISPF SILLFGGLIN IQHQSGLVVI DGWLKLTAPA QTAVLCKELR SALHSILKEL
IRKPENATIV DNEVVKSMIH LLLEEDKPSK
//