ID A0A0D2SDY4_GOSRA Unreviewed; 1232 AA.
AC A0A0D2SDY4;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 41.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN ORFNames=B456_013G141900 {ECO:0000313|EMBL:KJB81377.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB81377.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB81377.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00001556};
CC -!- SIMILARITY: Belongs to the DEAD box helicase family. DEAH subfamily.
CC PRP16 sub-subfamily. {ECO:0000256|ARBA:ARBA00038040}.
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DR EMBL; CM001752; KJB81377.1; -; Genomic_DNA.
DR RefSeq; XP_012462953.1; XM_012607499.1.
DR AlphaFoldDB; A0A0D2SDY4; -.
DR STRING; 29730.A0A0D2SDY4; -.
DR EnsemblPlants; KJB81377; KJB81377; B456_013G141900.
DR GeneID; 105782635; -.
DR Gramene; KJB81377; KJB81377; B456_013G141900.
DR KEGG; gra:105782635; -.
DR eggNOG; KOG0924; Eukaryota.
DR OMA; YDITEEM; -.
DR OrthoDB; 5488182at2759; -.
DR Proteomes; UP000032304; Chromosome 13.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1080; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR048333; HA2_WH.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF91; PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP16; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF21010; HA2_C; 1.
DR Pfam; PF04408; HA2_N; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304}.
FT DOMAIN 544..707
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 729..909
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 34..294
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1167..1232
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 67..82
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 89..103
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 116..190
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 191..205
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 253..279
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 280..294
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1167..1207
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1232 AA; 139182 MW; 9C019434A209B8A5 CRC64;
MSLDVGAREK QGNPKVDDGF KVPKEKITCI AASVDVDEGF ESSGVEETRS TVTNGSRSHT
NRRYRDKTAS ITTNSESGVT LDRGGSDDTF GTPRSREHRS SDVPASPSRS SRTVSSRSLR
YEREDHGVER RLSSDDSRNE HRNARKRHYY DDRRDTHGRY GEDYRRSRNR YESRTPGRSD
WDDGRWEWQD TPNRDSYSGS SRRHQPSPAP MFLGASPDAR LVSPWMGDRT PRSTVSASPW
DYASPSPVPI RASGASVKSS SSRYGRTSHQ LSFSSESSQS FEDEADKNSL AEEHNYEITE
SMRLEMEYNS DRAWYDREEG NTMFDADSSS LFLGDEASFQ KKEAELAKRL VRRDGTKMSL
AQSKKLSQLT ADNAQWEDRQ LLRSGAVRGT EVQTEFDDED ERKVILLVHD TKPPFLDGRI
VFTKQAEPVM PIKDPTSDMA IISRKGSNLV KEIHEKQSMS KSRQRFWELA GSKLGDILGV
EKTAEQIDAD TAEVGEHGEI DFKEDAKFAQ HLKKGEAVSE FAMSKSIAEQ RQYLPIYSVR
DELLQVIREN QVVVVVGETG SGKTTQLTQY LHEDGYTING VVGCTQPRRV AAMSVAKRVS
EEMETELGDK VGYAIRFEDV TGPNTIIKYM TDGVLLRETL KDADLDKYRV IVMDEAHERS
LNTDVLFGIL KKVVAQRRDF KLIVTSATLN AQKFSNFFGS VPIFHIPGRT FPVNILYSKT
PCEDYVEAAV KQAMTIHITS SPGDILIFMT GQDEIEAACY ALAERIEQLI SSTRKGVPKL
LILPIYSQLP ADLQAKIFQK AEDGARKCIV ATNIAETSLT VDGIFYVIDT GFGKMKVYNP
KMGMDALQVF PVSRAAADQR AGRAGRTGPG TCYRLYTESA YLNEMLPAPV PEIQRTNLGN
VVLLLKSLKI ENLLDFDFMD PPPQENILNS MYQLWVLGAL NNVGGLTDIG WKMVEFPLDP
PLAKMLLMGE QLECLDEVLT IVSMLSVPSV FFRPKDRAEE SDAAREKFFV PESDHLTLLN
VYRQWKANQY RGDWCNDHFL HVKGLKKARE VRSQLLDILK TLKIPLTSCG FDWDIVRKAI
CSAYFHNAAR LKGVGEYVNC RNGMPCHLHP SSALYGLGYT PEYVVYHELI LTTKEYMQCV
TAVEPQWLAE LGPMFFSVKE SDTTLLEHKR KQKEEKTAME EEMENLRKMQ AEAEEESKEK
ERQKRAKQQQ QVSMPGLRKG SSTYLRPKKF GL
//