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Database: UniProt
Entry: A0A0D2SDY4_GOSRA
LinkDB: A0A0D2SDY4_GOSRA
Original site: A0A0D2SDY4_GOSRA 
ID   A0A0D2SDY4_GOSRA        Unreviewed;      1232 AA.
AC   A0A0D2SDY4;
DT   29-APR-2015, integrated into UniProtKB/TrEMBL.
DT   29-APR-2015, sequence version 1.
DT   24-JAN-2024, entry version 41.
DE   RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE            EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN   ORFNames=B456_013G141900 {ECO:0000313|EMBL:KJB81377.1};
OS   Gossypium raimondii (New World cotton).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX   NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB81377.1, ECO:0000313|Proteomes:UP000032304};
RN   [1] {ECO:0000313|EMBL:KJB81377.1, ECO:0000313|Proteomes:UP000032304}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=23257886; DOI=10.1038/nature11798;
RA   Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA   Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA   Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA   Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA   Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA   Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA   Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA   Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA   ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA   Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA   Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA   Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA   Wang X., Schmutz J.;
RT   "Repeated polyploidization of Gossypium genomes and the evolution of
RT   spinnable cotton fibres.";
RL   Nature 492:423-427(2012).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC         Evidence={ECO:0000256|ARBA:ARBA00001556};
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. DEAH subfamily.
CC       PRP16 sub-subfamily. {ECO:0000256|ARBA:ARBA00038040}.
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DR   EMBL; CM001752; KJB81377.1; -; Genomic_DNA.
DR   RefSeq; XP_012462953.1; XM_012607499.1.
DR   AlphaFoldDB; A0A0D2SDY4; -.
DR   STRING; 29730.A0A0D2SDY4; -.
DR   EnsemblPlants; KJB81377; KJB81377; B456_013G141900.
DR   GeneID; 105782635; -.
DR   Gramene; KJB81377; KJB81377; B456_013G141900.
DR   KEGG; gra:105782635; -.
DR   eggNOG; KOG0924; Eukaryota.
DR   OMA; YDITEEM; -.
DR   OrthoDB; 5488182at2759; -.
DR   Proteomes; UP000032304; Chromosome 13.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   CDD; cd18791; SF2_C_RHA; 1.
DR   Gene3D; 1.20.120.1080; -; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR   InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR048333; HA2_WH.
DR   InterPro; IPR007502; Helicase-assoc_dom.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR   PANTHER; PTHR18934:SF91; PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP16; 1.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF21010; HA2_C; 1.
DR   Pfam; PF04408; HA2_N; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF07717; OB_NTP_bind; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00847; HA2; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
PE   3: Inferred from homology;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Reference proteome {ECO:0000313|Proteomes:UP000032304}.
FT   DOMAIN          544..707
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000259|PROSITE:PS51192"
FT   DOMAIN          729..909
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000259|PROSITE:PS51194"
FT   REGION          1..22
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          34..294
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1167..1232
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        67..82
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        89..103
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        116..190
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        191..205
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        253..279
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        280..294
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1167..1207
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1232 AA;  139182 MW;  9C019434A209B8A5 CRC64;
     MSLDVGAREK QGNPKVDDGF KVPKEKITCI AASVDVDEGF ESSGVEETRS TVTNGSRSHT
     NRRYRDKTAS ITTNSESGVT LDRGGSDDTF GTPRSREHRS SDVPASPSRS SRTVSSRSLR
     YEREDHGVER RLSSDDSRNE HRNARKRHYY DDRRDTHGRY GEDYRRSRNR YESRTPGRSD
     WDDGRWEWQD TPNRDSYSGS SRRHQPSPAP MFLGASPDAR LVSPWMGDRT PRSTVSASPW
     DYASPSPVPI RASGASVKSS SSRYGRTSHQ LSFSSESSQS FEDEADKNSL AEEHNYEITE
     SMRLEMEYNS DRAWYDREEG NTMFDADSSS LFLGDEASFQ KKEAELAKRL VRRDGTKMSL
     AQSKKLSQLT ADNAQWEDRQ LLRSGAVRGT EVQTEFDDED ERKVILLVHD TKPPFLDGRI
     VFTKQAEPVM PIKDPTSDMA IISRKGSNLV KEIHEKQSMS KSRQRFWELA GSKLGDILGV
     EKTAEQIDAD TAEVGEHGEI DFKEDAKFAQ HLKKGEAVSE FAMSKSIAEQ RQYLPIYSVR
     DELLQVIREN QVVVVVGETG SGKTTQLTQY LHEDGYTING VVGCTQPRRV AAMSVAKRVS
     EEMETELGDK VGYAIRFEDV TGPNTIIKYM TDGVLLRETL KDADLDKYRV IVMDEAHERS
     LNTDVLFGIL KKVVAQRRDF KLIVTSATLN AQKFSNFFGS VPIFHIPGRT FPVNILYSKT
     PCEDYVEAAV KQAMTIHITS SPGDILIFMT GQDEIEAACY ALAERIEQLI SSTRKGVPKL
     LILPIYSQLP ADLQAKIFQK AEDGARKCIV ATNIAETSLT VDGIFYVIDT GFGKMKVYNP
     KMGMDALQVF PVSRAAADQR AGRAGRTGPG TCYRLYTESA YLNEMLPAPV PEIQRTNLGN
     VVLLLKSLKI ENLLDFDFMD PPPQENILNS MYQLWVLGAL NNVGGLTDIG WKMVEFPLDP
     PLAKMLLMGE QLECLDEVLT IVSMLSVPSV FFRPKDRAEE SDAAREKFFV PESDHLTLLN
     VYRQWKANQY RGDWCNDHFL HVKGLKKARE VRSQLLDILK TLKIPLTSCG FDWDIVRKAI
     CSAYFHNAAR LKGVGEYVNC RNGMPCHLHP SSALYGLGYT PEYVVYHELI LTTKEYMQCV
     TAVEPQWLAE LGPMFFSVKE SDTTLLEHKR KQKEEKTAME EEMENLRKMQ AEAEEESKEK
     ERQKRAKQQQ QVSMPGLRKG SSTYLRPKKF GL
//
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