ID A0A0D2SK20_GOSRA Unreviewed; 509 AA.
AC A0A0D2SK20;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 38.
DE RecName: Full=Matrin-type domain-containing protein {ECO:0000259|PROSITE:PS50171};
GN ORFNames=B456_007G258600 {ECO:0000313|EMBL:KJB44544.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB44544.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB44544.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SF3A3 family.
CC {ECO:0000256|ARBA:ARBA00008776}.
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DR EMBL; CM001746; KJB44538.1; -; Genomic_DNA.
DR EMBL; CM001746; KJB44540.1; -; Genomic_DNA.
DR EMBL; CM001746; KJB44542.1; -; Genomic_DNA.
DR EMBL; CM001746; KJB44543.1; -; Genomic_DNA.
DR EMBL; CM001746; KJB44544.1; -; Genomic_DNA.
DR RefSeq; XP_012492510.1; XM_012637056.1.
DR RefSeq; XP_012492511.1; XM_012637057.1.
DR AlphaFoldDB; A0A0D2SK20; -.
DR EnsemblPlants; KJB44538; KJB44538; B456_007G258600.
DR EnsemblPlants; KJB44540; KJB44540; B456_007G258600.
DR EnsemblPlants; KJB44542; KJB44542; B456_007G258600.
DR EnsemblPlants; KJB44543; KJB44543; B456_007G258600.
DR EnsemblPlants; KJB44544; KJB44544; B456_007G258600.
DR GeneID; 105804431; -.
DR Gramene; KJB44538; KJB44538; B456_007G258600.
DR Gramene; KJB44540; KJB44540; B456_007G258600.
DR Gramene; KJB44542; KJB44542; B456_007G258600.
DR Gramene; KJB44543; KJB44543; B456_007G258600.
DR Gramene; KJB44544; KJB44544; B456_007G258600.
DR KEGG; gra:105804431; -.
DR OMA; KSSERWQ; -.
DR OrthoDB; 5483967at2759; -.
DR Proteomes; UP000032304; Chromosome 7.
DR GO; GO:0005681; C:spliceosomal complex; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR InterPro; IPR000690; Matrin/U1-C_Znf_C2H2.
DR InterPro; IPR025086; SDE2-like_C_dom.
DR InterPro; IPR031774; SF3A3_dom.
DR InterPro; IPR024598; SF3a60/Prp9_C.
DR InterPro; IPR021966; SF3a60_bindingd.
DR PANTHER; PTHR12786:SF2; SPLICING FACTOR 3A SUBUNIT 3; 1.
DR PANTHER; PTHR12786; SPLICING FACTOR SF3A-RELATED; 1.
DR Pfam; PF13297; SDE2_2C; 1.
DR Pfam; PF16837; SF3A3; 1.
DR Pfam; PF12108; SF3a60_bindingd; 1.
DR Pfam; PF11931; SF3a60_Prp9_C; 1.
DR PROSITE; PS50171; ZF_MATRIN; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304}.
FT DOMAIN 414..445
FT /note="Matrin-type"
FT /evidence="ECO:0000259|PROSITE:PS50171"
FT REGION 361..382
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 363..382
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 509 AA; 59849 MW; 5E39074905E23E26 CRC64;
MSSTLLEVTR AAHEDVEQLE RLMVKDLQND PPTAKDKLYQ SHRVRNNIDT IISTTEKLIE
IYEDKDNARK DEIAALGGQT ATGINVFSAF YDRLKEIREY HRKHPAARLV NVNEEDEALL
KEEPVIEFSG EEAFGRYLDL HELFNQYINS KFGSKIEYSA YLDVFSQPHN IPWKLKSTRQ
FREYMENLLE YLIYFFQRTE PLQDLDRIFS KVEAEFEEQW ANGQVQGWEK QGQENEDDPA
QHTMIDLDYY STVEELMEVG PEKLKEALAS LGLKTGGTVQ QRAERLFLTK HTPLEKLDKK
HFAKGSHGPR QNGSTAVSQD INSLKHIALM EAKMKKLSDL LSKTIEQTKE NVVKKQALTY
EEMEQEREEE ETQVDTESDD EDQQIYNPLK LPMGWDGKPI PYWLYKLHGL GQEFKCEICG
NYSYWGRRAF ERHFKEWRHQ HGMRCLGIPN TKNFNEITNI QEAQELWEKI RERQGVNKWR
PDLEEEYEDK EGNIYNKKTY TDLQRQGLI
//
