ID A0A0D2VB42_GOSRA Unreviewed; 241 AA.
AC A0A0D2VB42;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE RecName: Full=RNase H type-1 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=B456_013G086700 {ECO:0000313|EMBL:KJB80216.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB80216.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB80216.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
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DR EMBL; CM001752; KJB80216.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0D2VB42; -.
DR STRING; 29730.A0A0D2VB42; -.
DR EnsemblPlants; KJB80216; KJB80216; B456_013G086700.
DR Gramene; KJB80216; KJB80216; B456_013G086700.
DR eggNOG; KOG1075; Eukaryota.
DR OMA; MEAMECL; -.
DR Proteomes; UP000032304; Chromosome 13.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR47723; OS05G0353850 PROTEIN; 1.
DR PANTHER; PTHR47723:SF10; REVERSE TRANSCRIPTASE-LIKE PROTEIN; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000032304}.
FT DOMAIN 19..81
FT /note="Reverse transcriptase zinc-binding"
FT /evidence="ECO:0000259|Pfam:PF13966"
FT DOMAIN 99..205
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|Pfam:PF13456"
SQ SEQUENCE 241 AA; 27209 MW; 53B985FA4B1971B1 CRC64;
MFFLVQSGNQ VGPLCNHMSV NTTATLRMKV VEMLVLHPKL LTNHERVRRN LVVTDGCLMC
GGGQETILHV LHDCSFATNI WRTGFKWSSP SHGWVKINTN GSKSMTNNWS IFGGVIQDSL
GNWKEGFRKQ LGRCSIFNAK LWVILFIVES DCMEAMECLT DRSGDCHSMT LIRKITTVKK
CFQMVKFQFI RREGNMVANS IAKTCSKGDS ELAIIDFPTF HGRKLLLADN LGDFFCKVFL
S
//