ID A0A0D2ZRS9_BRAOL Unreviewed; 562 AA.
AC A0A0D2ZRS9;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 35.
DE RecName: Full=Nicalin {ECO:0000256|PIRNR:PIRNR011018};
GN Name=106320288 {ECO:0000313|EnsemblPlants:Bo00874s030.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo00874s030.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo00874s030.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TO1000 {ECO:0000313|EnsemblPlants:Bo00874s030.1};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo00874s030.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- SIMILARITY: Belongs to the nicastrin family.
CC {ECO:0000256|ARBA:ARBA00007717, ECO:0000256|PIRNR:PIRNR011018}.
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DR RefSeq; XP_013614106.1; XM_013758652.1.
DR AlphaFoldDB; A0A0D2ZRS9; -.
DR STRING; 109376.A0A0D2ZRS9; -.
DR EnsemblPlants; Bo00874s030.1; Bo00874s030.1; Bo00874s030.
DR GeneID; 106320288; -.
DR Gramene; Bo00874s030.1; Bo00874s030.1; Bo00874s030.
DR KEGG; boe:106320288; -.
DR eggNOG; KOG2526; Eukaryota.
DR HOGENOM; CLU_034102_2_0_1; -.
DR OMA; GGCITAY; -.
DR OrthoDB; 458841at2759; -.
DR Proteomes; UP000032141; Unassembled WGS sequence.
DR GO; GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0009966; P:regulation of signal transduction; IEA:InterPro.
DR CDD; cd03882; M28_nicalin_like; 1.
DR Gene3D; 3.40.630.10; Zn peptidases; 1.
DR InterPro; IPR018247; EF_Hand_1_Ca_BS.
DR InterPro; IPR016574; Nicalin.
DR PANTHER; PTHR31826; NICALIN; 1.
DR PANTHER; PTHR31826:SF7; NICALIN; 1.
DR Pfam; PF05450; Nicastrin; 1.
DR PIRSF; PIRSF011018; Nicalin; 1.
DR SUPFAM; SSF53187; Zn-dependent exopeptidases; 1.
DR PROSITE; PS00018; EF_HAND_1; 1.
DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1.
PE 3: Inferred from homology;
KW Endoplasmic reticulum {ECO:0000256|ARBA:ARBA00022824};
KW Glycoprotein {ECO:0000256|ARBA:ARBA00023180};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}.
FT SIGNAL 1..39
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 40..562
FT /note="Nicalin"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5002256156"
FT TRANSMEM 520..544
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
SQ SEQUENCE 562 AA; 62145 MW; 98AC5EBC4FFBDF62 CRC64;
MAEEKNSKQR HHRSMFLESM YPVVALMLVL VACVELCDAA TVVDVYRLIQ YDISGAPFGS
RFSSLNHHAA SLSFQHGADL SRSVLILPLR ELDIAFVQDY ISQKQSLGGL LILLPQTFRP
GNIGGGETQG LRILLAQLEK LLLRSNIPFP VYFAFENEET DTMLADVKKN DALGQQATAT
TGGYKLVISV SEPRKIASPT ITNIQGWLPG SRADGDSNQL STIAVVASYD TFGAAPALSV
GSDSNGSGVV ALLEVARLFS TLYSNPKTRG RYNLLFALTS GGPYNYEGTQ KWLKSLDQRM
RESIDYAICL NSVGSWDNEL LVHVSKPPEN AYIKQIFEGF SNVAEDLGFQ VSLKHKKINI
SNSRVAWEHE QFSRLRVTAA TVSELLTPPE LLESAGSLSD TRQHVNEDSI IKGVKLVAES
LARHIYGHQG KDIQIFADNS SLAVNRFYVK SWLDGLSQTP RVAPFLSKNE PLIMALKKEL
EDYTAEVSIQ QESLDGIFTF YDSTKASLNI YQVASVTFDL LLLLVLGSYL IMLFSFLVIT
TRGLDDLISI FRRPPSRKMK IA
//