ID A0A0D3A8I7_BRAOL Unreviewed; 1540 AA.
AC A0A0D3A8I7;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=106310085 {ECO:0000313|EnsemblPlants:Bo1g063790.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g063790.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo1g063790.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo1g063790.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
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DR RefSeq; XP_013602746.1; XM_013747292.1.
DR RefSeq; XP_013602753.1; XM_013747299.1.
DR STRING; 109376.A0A0D3A8I7; -.
DR EnsemblPlants; Bo1g063790.1; Bo1g063790.1; Bo1g063790.
DR GeneID; 106310085; -.
DR Gramene; Bo1g063790.1; Bo1g063790.1; Bo1g063790.
DR KEGG; boe:106310085; -.
DR eggNOG; KOG1473; Eukaryota.
DR HOGENOM; CLU_002742_1_0_1; -.
DR OMA; ICRQIME; -.
DR OrthoDB; 450464at2759; -.
DR Proteomes; UP000032141; Chromosome C1.
DR GO; GO:0000785; C:chromatin; IEA:UniProt.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd15532; PHD2_CHD_II; 1.
DR CDD; cd20401; Tudor_AtPTM-like; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR InterPro; IPR018501; DDT_dom.
DR InterPro; IPR047365; Tudor_AtPTM-like.
DR InterPro; IPR028942; WHIM1_dom.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46508:SF7; DDT DOMAIN-CONTAINING PROTEIN PTM; 1.
DR PANTHER; PTHR46508; PHD FINGER FAMILY PROTEIN; 1.
DR Pfam; PF02791; DDT; 1.
DR Pfam; PF00628; PHD; 1.
DR Pfam; PF21743; PTM_DIR17_Tudor; 1.
DR Pfam; PF15612; WHIM1; 1.
DR SMART; SM00571; DDT; 1.
DR SMART; SM00249; PHD; 3.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 2.
DR PROSITE; PS50827; DDT; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 191..251
FT /note="DDT"
FT /evidence="ECO:0000259|PROSITE:PS50827"
FT DOMAIN 411..458
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 1..34
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1167..1191
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1308..1353
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1379..1420
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1313..1327
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1396..1410
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1540 AA; 172162 MW; F2726E2CE2310F39 CRC64;
MEAKVPRPRG RPRKRQKLEV DNRTPNAKLN NRGKKQVLEV EPAVPISLLG RYVLKDFGKD
GAFLGKIVSY ETGLYRVEYE DGDFEDMESG DLRPFLIEDS SLEDELCLRR SKLDKLIVKK
EVKKKKNHPE NKGAGLPYHV NGVKATSEAE CEDGDSESSD CEDKGSVFEN DAPVLLPVDL
PPSSGTVGIP EDAVVHLFSV YGFLRSFSFQ LYICPFELDD FVGALKFSGP NSLLDSVHVA
LMRALKGHLE RLSADETDLA SKCLKCIDWS LLDVLTWPVY LVQYLTAMAH ASGPQWNWFY
KFVLEMEYYS LPVGMKLKIL QILCDDIFDV VDLRSEIDAR EESEIGFDPD RIATNLPESR
PRRVHPRFSK TSACMEKGAI DMVPIKHGIS SANASKNLGS NEVNSDMDEN SDECRICGMD
GTLLCCDGCP LAYHSRCIGV VKMYIPDGPW FCPECSINKK GPKIAHGTSL RGAVQFGMDP
HGRLFLGTCN HLLVLNVSVN GDTAVKYYSV NDLSKVVRVL LSASSHALEY LDICKAIAQY
WELPEGIIFS LRERDIGLDE AKDKVDAKVT EIKSDGANIS SRNDVQTVFD LPTSALSNTR
NGVIEGLSGM HEKKLAAGVT YSGLLFKPQA YNNHYTNGEL AVSAAATLAD LTSEEAHEPD
LRKYSTAKKA ASNNILVQMK AFSLVASRFF WPSPDKKEIT RERCGWCHSC KLTSASKRGC
MLNAAVSGAT KGAMKIFSGL FPLRNGDGVL SSIAAYALYL EESLRGLTAG PFLSETLRKQ
WRKQVEEAST CKAVKALLLE LEENICSIAL STDWFKLMDD WLIELSMFPS APLTVVVAQK
RGPGRRRQRN LAEVTAEGSE DDSFTWWRGG KLSKVILSKA VLSQSAIRKA ACQGGSKKIS
GFSYGDASYI PKRIRRSIWK AAVESSKNIS QLALQVRYLD MSIRWSELVR PEQNLQDVKG
LETDANVFRN ARICDKKISD TKVSYGVFFG NQKHLPSRVM KNIIEVEKTQ DGNEKYWFQE
ARVPLYLIKE FEESLHRVPM PPTKKPSNKL SKLQKKQLKA SRTDLFSYIA SRRDNMEKCS
CASCYHDVLL RDKTTCSSCQ GFCHNECTWK SQHTNGKVEV VVTCKKCHLA KTRLPTNINH
RQPTTPQLTI TGRHQSIVTP VIKIKPPSQQ LSSQKTQEKP SGIKQVAPAS AVASNSKPKT
LSCGIMWRKK NLEDTGVDFR KQNILLAGRS DKPSLEPVCG LCQKPYNPGL TYIHCTKCEK
WFHTEAVKLE ESQIPEVVGF KCCKCRRIRQ PECPYIDPKL REQKEIKRLV FKNQKQRQGN
SGLDSDSERM SEQQDSKPST PMPATPMFPP MDAFFPEDDP LLVSVSKVEQ ITPTNYDLEW
NTGASAPGPG PQKLPVRRQA KREDCNAEPQ PMAKPEEAEQ ALPVVSDWDA SGELLFDYED
MEFEPQTYFS LTELLTADDS NGQGEINGDK DVPVINPQGE TTEKEYEEMG PCQRCLQIEP
VPDLFCTVCG LLIHSHCSPW EEPLSFPGTS WSCGQCREWQ
//
