GenomeNet

Database: UniProt
Entry: A0A0D3ADA6_BRAOL
LinkDB: A0A0D3ADA6_BRAOL
Original site: A0A0D3ADA6_BRAOL 
ID   A0A0D3ADA6_BRAOL        Unreviewed;       379 AA.
AC   A0A0D3ADA6;
DT   29-APR-2015, integrated into UniProtKB/TrEMBL.
DT   29-APR-2015, sequence version 1.
DT   24-JAN-2024, entry version 31.
DE   RecName: Full=MBD domain-containing protein {ECO:0000259|Pfam:PF01429};
OS   Brassica oleracea var. oleracea.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX   NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g126020.1, ECO:0000313|Proteomes:UP000032141};
RN   [1] {ECO:0000313|EnsemblPlants:Bo1g126020.1, ECO:0000313|Proteomes:UP000032141}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX   PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA   Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA   Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA   Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA   Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA   Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA   Chalhoub B., Sharpe A.G.;
RT   "Transcriptome and methylome profiling reveals relics of genome dominance
RT   in the mesopolyploid Brassica oleracea.";
RL   Genome Biol. 15:R77-R77(2014).
RN   [2] {ECO:0000313|EnsemblPlants:Bo1g126020.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (MAR-2015) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   AlphaFoldDB; A0A0D3ADA6; -.
DR   STRING; 109376.A0A0D3ADA6; -.
DR   EnsemblPlants; Bo1g126020.1; Bo1g126020.1; Bo1g126020.
DR   Gramene; Bo1g126020.1; Bo1g126020.1; Bo1g126020.
DR   HOGENOM; CLU_730267_0_0_1; -.
DR   OMA; NSHAQEE; -.
DR   Proteomes; UP000032141; Chromosome C1.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   InterPro; IPR016177; DNA-bd_dom_sf.
DR   InterPro; IPR039622; MBD10/11.
DR   InterPro; IPR001739; Methyl_CpG_DNA-bd.
DR   PANTHER; PTHR33729; METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED; 1.
DR   PANTHER; PTHR33729:SF6; METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11; 1.
DR   Pfam; PF01429; MBD; 1.
DR   SUPFAM; SSF54171; DNA-binding domain; 1.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        85..101
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          148..198
FT                   /note="MBD"
FT                   /evidence="ECO:0000259|Pfam:PF01429"
FT   REGION          180..379
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        180..203
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        204..247
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        273..289
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        303..379
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   379 AA;  41289 MW;  ED464F1E4EE30FF4 CRC64;
     MATALFNTTT TRSSNLYLLH HSILPRLQFR RRSISLLVTP RSLRRIAVAG GPPSPPTPDP
     PPPENTTQLE GLVGAVTRVQ DRVKIFLAVL FWMSLFFWVT VTDGRGIAKQ NGYRRGKCTC
     GATSTFFMEK TDIGKVVVCS IDWMIQKFFP NKVGSVKKTE IVFVAPTGEE ISNRKQLDQY
     LKSHPGNPSI TEFDWTTSGT PRRSARISDK KTKSTPSPDK EPPKKRGRTK SSGSKKDADE
     EGEKPEGGGV GNSHAQEEDT EMSPLKGTEE NVTVKDGSGE TKDDMVAEET PDPAPVQEAG
     GESMKEQTHD LVGDTSKESV ESPTNKEEAT EIKTAEANTE QKKEDAGQGA PESEPEAETK
     SHEGNGLTAE AEGKEKAAE
//
DBGET integrated database retrieval system