ID A0A0D3ALA1_BRAOL Unreviewed; 750 AA.
AC A0A0D3ALA1;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE RecName: Full=glycerophosphodiester phosphodiesterase {ECO:0000256|ARBA:ARBA00012247};
DE EC=3.1.4.46 {ECO:0000256|ARBA:ARBA00012247};
GN Name=106322446 {ECO:0000313|EnsemblPlants:Bo2g028750.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo2g028750.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo2g028750.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo2g028750.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a sn-glycero-3-phosphodiester + H2O = an alcohol + H(+) + sn-
CC glycerol 3-phosphate; Xref=Rhea:RHEA:12969, ChEBI:CHEBI:15377,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:30879, ChEBI:CHEBI:57597,
CC ChEBI:CHEBI:83408; EC=3.1.4.46;
CC Evidence={ECO:0000256|ARBA:ARBA00029315};
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DR RefSeq; XP_013615915.1; XM_013760461.1.
DR AlphaFoldDB; A0A0D3ALA1; -.
DR STRING; 109376.A0A0D3ALA1; -.
DR EnsemblPlants; Bo2g028750.1; Bo2g028750.1; Bo2g028750.
DR GeneID; 106322446; -.
DR Gramene; Bo2g028750.1; Bo2g028750.1; Bo2g028750.
DR KEGG; boe:106322446; -.
DR eggNOG; KOG2258; Eukaryota.
DR HOGENOM; CLU_010414_0_1_1; -.
DR OMA; STFFPKG; -.
DR OrthoDB; 1200549at2759; -.
DR Proteomes; UP000032141; Chromosome C2.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0008889; F:glycerophosphodiester phosphodiesterase activity; IEA:UniProtKB-EC.
DR GO; GO:0006071; P:glycerol metabolic process; IEA:UniProtKB-KW.
DR GO; GO:0006629; P:lipid metabolic process; IEA:InterPro.
DR CDD; cd08603; GDPD_SHV3_repeat_1; 1.
DR CDD; cd08604; GDPD_SHV3_repeat_2; 1.
DR Gene3D; 3.20.20.190; Phosphatidylinositol (PI) phosphodiesterase; 2.
DR InterPro; IPR030395; GP_PDE_dom.
DR InterPro; IPR017946; PLC-like_Pdiesterase_TIM-brl.
DR PANTHER; PTHR43620:SF28; GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE; 1.
DR PANTHER; PTHR43620; GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE; 1.
DR Pfam; PF03009; GDPD; 1.
DR SUPFAM; SSF51695; PLC-like phosphodiesterases; 2.
DR PROSITE; PS51704; GP_PDE; 2.
PE 4: Predicted;
KW Glycerol metabolism {ECO:0000256|ARBA:ARBA00022798};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT SIGNAL 1..17
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 18..750
FT /note="glycerophosphodiester phosphodiesterase"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5002256808"
FT TRANSMEM 728..748
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 41..339
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
FT DOMAIN 355..651
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
SQ SEQUENCE 750 AA; 80735 MW; 67C2D43FD708A203 CRC64;
MLRFLILFSL LIHSCVAPPK TKAAAGTLPA KKWLTLSGKE PAVVARGGFS GLFPESSATA
NDLAISSSSP DLTMLCNLQL TKDGAGFCLS DIRLDNSTTI STFFPKGQKT YKVYGQNLKG
WFALDYSADT IFSNVSLVQN IFSRPSIFDG QMAIAAVEDV LDTKPPKFWL SVQYDAFYME
HKLSPAEYIR SLRFNGINVI SSPEIGFLKS IGKDARRAKT KLIFEFKDPE ANEPTTNKKY
SEILLNLAAI KVFATGIIVP KDYIWPIDSA KYLKPPTTVV TDAHKAGLEI YASGFVNDML
TSYNYSYDPS AEYLQFVDNG QFSVDGFISD FPPTASQAIS CFAHQKRDTP KIGKTLVITH
NGASGDYPGC TDLAYQKAVD DGADVIDCSV QMTKDGLAFC LDSADLIPTT TAATTLMTRA
TSVPEIQSKN GIFSFDLTWA EIQSLKPQIQ SPFLAADGFP RNPKNKNAGK FMTLADFLKF
SKAKAVTGVL INIQNAAYLA SKKGLGIVDA VKSALTSSKL DMKVLIQSDD SSVLDSFKAV
PQYTRVLSID KEIGDAPKPT IEEIKKHADA VNVLRSSLVT ISQSFATGKT KVVEAMHKGN
ISVYVSVLRN EYLSITFDYF SDPTVELATF IAGNGVDGVV TEFPATATRY LRSPCSDLYR
ELPFAILPAK AGTLVSVASK EAQPPASAPN PPLDAKDVID PPLPPVANLA TNNASGGAPP
ASLRSGTIAT TANLSLSLIA MLALGLLLSA
//
