ID A0A0D3D0L1_BRAOL Unreviewed; 393 AA.
AC A0A0D3D0L1;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 38.
DE RecName: Full=glycerophosphodiester phosphodiesterase {ECO:0000256|ARBA:ARBA00012247};
DE EC=3.1.4.46 {ECO:0000256|ARBA:ARBA00012247};
GN Name=106296510 {ECO:0000313|EnsemblPlants:Bo6g118560.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g118560.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo6g118560.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo6g118560.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a sn-glycero-3-phosphodiester + H2O = an alcohol + H(+) + sn-
CC glycerol 3-phosphate; Xref=Rhea:RHEA:12969, ChEBI:CHEBI:15377,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:30879, ChEBI:CHEBI:57597,
CC ChEBI:CHEBI:83408; EC=3.1.4.46;
CC Evidence={ECO:0000256|ARBA:ARBA00029315};
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DR RefSeq; XP_013588110.1; XM_013732656.1.
DR AlphaFoldDB; A0A0D3D0L1; -.
DR STRING; 109376.A0A0D3D0L1; -.
DR EnsemblPlants; Bo6g118560.1; Bo6g118560.1; Bo6g118560.
DR GeneID; 106296510; -.
DR Gramene; Bo6g118560.1; Bo6g118560.1; Bo6g118560.
DR KEGG; boe:106296510; -.
DR eggNOG; KOG2258; Eukaryota.
DR HOGENOM; CLU_030226_4_1_1; -.
DR OMA; MEYEYWI; -.
DR OrthoDB; 5477293at2759; -.
DR Proteomes; UP000032141; Chromosome C6.
DR GO; GO:0008889; F:glycerophosphodiester phosphodiesterase activity; IEA:UniProtKB-EC.
DR GO; GO:0006071; P:glycerol metabolic process; IEA:UniProtKB-KW.
DR GO; GO:0006629; P:lipid metabolic process; IEA:InterPro.
DR CDD; cd08602; GDPD_ScGlpQ1_like; 1.
DR Gene3D; 3.20.20.190; Phosphatidylinositol (PI) phosphodiesterase; 1.
DR InterPro; IPR030395; GP_PDE_dom.
DR InterPro; IPR017946; PLC-like_Pdiesterase_TIM-brl.
DR PANTHER; PTHR43620:SF45; GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPD5; 1.
DR PANTHER; PTHR43620; GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE; 1.
DR Pfam; PF03009; GDPD; 1.
DR SUPFAM; SSF51695; PLC-like phosphodiesterases; 1.
DR PROSITE; PS51704; GP_PDE; 1.
PE 4: Predicted;
KW Glycerol metabolism {ECO:0000256|ARBA:ARBA00022798};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..20
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 21..393
FT /note="glycerophosphodiester phosphodiesterase"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5002259244"
FT DOMAIN 44..362
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
SQ SEQUENCE 393 AA; 45093 MW; C02E0C1A78A11D3B CRC64;
MILTKCLPLI WLSLVTLCAG RTLYQLPGKG VKDDTKQPIQ TSRPFNIAHR GSNGEIPEET
KAAYLRAIEE GTDFIETDIL SSKDGVLICF HDVILDLTTD VASRKEFAGR NRTYDVQGFK
ITGFFTFDFT LKELKTLRTK QRYAFRDQQY NGKYPIITFE EFLAIARDAP RVVGIYPEIK
NPVLMNQHVK WPGGKRFEDK VVETLKKHGY GGAYLSKQWL NKPLFIQSFA PSSLVYISNL
TDSPKVLLID DVTMPTQDTN QTYAEITSDT YFTYIKEYVV GIGPWKDTIV PVTNNYMLTP
TDLVKRAHAH NLQVHPYTYR NENQFLHFNF SQDPYMEYEY WIKEIGVDGL FTDFTGSLHN
YQEWASPLPD TSSKSTRQLL SHIASLVRPY AKA
//
