ID   A0A0D3E9U6_BRAOL        Unreviewed;       711 AA.
AC   A0A0D3E9U6;
DT   29-APR-2015, integrated into UniProtKB/TrEMBL.
DT   29-APR-2015, sequence version 1.
DT   27-MAR-2024, entry version 35.
DE   RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN   Name=106312941 {ECO:0000313|EnsemblPlants:Bo9g097440.1};
OS   Brassica oleracea var. oleracea.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX   NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g097440.1, ECO:0000313|Proteomes:UP000032141};
RN   [1] {ECO:0000313|EnsemblPlants:Bo9g097440.1, ECO:0000313|Proteomes:UP000032141}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX   PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA   Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA   Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA   Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA   Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA   Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA   Chalhoub B., Sharpe A.G.;
RT   "Transcriptome and methylome profiling reveals relics of genome dominance
RT   in the mesopolyploid Brassica oleracea.";
RL   Genome Biol. 15:R77-R77(2014).
RN   [2] {ECO:0000313|EnsemblPlants:Bo9g097440.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (MAR-2015) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC       {ECO:0000256|ARBA:ARBA00006643}.
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DR   RefSeq; XP_013606100.1; XM_013750646.1.
DR   AlphaFoldDB; A0A0D3E9U6; -.
DR   STRING; 109376.A0A0D3E9U6; -.
DR   EnsemblPlants; Bo9g097440.1; Bo9g097440.1; Bo9g097440.
DR   GeneID; 106312941; -.
DR   Gramene; Bo9g097440.1; Bo9g097440.1; Bo9g097440.
DR   KEGG; boe:106312941; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_37_8_1; -.
DR   OMA; ACIIELF; -.
DR   OrthoDB; 446870at2759; -.
DR   Proteomes; UP000032141; Chromosome C9.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR045215; PPR_prot_At1g15510.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 4.
DR   PANTHER; PTHR24015:SF1832; OS03G0241800 PROTEIN; 1.
DR   PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 3.
DR   Pfam; PF13041; PPR_2; 2.
DR   PROSITE; PS51375; PPR; 4.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          131..165
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          197..227
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          298..332
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          399..433
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          622..711
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   711 AA;  80786 MW;  E86398863AE9576D CRC64;
     MEIPLAFYQS LRLDDNKSRS RDSSYSNPNV FNFPRFSGYD FSLRRRRWKN PFAKITCSSL
     VQGLKPKPKL KPEPIREIDQ GPKDPVLHDT QISKSAVAIC SQIEKLVLCN RLREAFELFE
     VLEIQGSLRI GISTYDALVE ACIRLKSIRC VKRVHGYMLS NGFEPEQFMM NRILMMHVKC
     RMIRDARRLF DEMPERNLFS YNSIISGFVN FGNYLEAFQL FKMMWEELSD SETHTFAVML
     RASAGLGSIE VGKQLHVCAL KLGVVDNTFV SCGLIDMYSK CGDVEDARCV FDDMPEKTTV
     AWNNIIAGYA LHGYSEEALR LLYDMRDSST SLDQFTLSIL IRISTRLAKV ELTKQAHARL
     IRSGFESEIV ANTALVDFYS KWGRVDTARY VFDKLPRKNI ISWNALMGGY ANHGRGADAV
     NLFEKMLAAN VGPNHVTFLA VLSACAYSGL SERGWEIFLS MSEVHGIKPR AMHYACMIEI
     LGRDGLLDEA IAFIRRAPLK PTVNMWAALL NACRMHGNLE LGRVVAEKLY GMEPEKLGNY
     VVMYNVYNSM GKTAEAAGVL DTLESKGLRM MPACTWVEVG DQTHSFLSGY KCDSYNEAVK
     RQIYHKVDEL MKEISEYGYS VAENKNLLSD VDVNEEQGVV RYHSEKLAIA YGLVNTPEWN
     PLQITQNHRI CKECHKVVEF ISLITGREIV VRDASRFHHF KEGKCSCGGY W
//